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    • Maintains the resources displayed on bioimage.io (Successor to collection-bioimage-io)
      Python
      112101Updated Apr 12, 2026Apr 12, 2026
    • Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
      TypeScript
      4993Updated Apr 11, 2026Apr 11, 2026
    • Specification for the bioimage.io model description file.
      Jupyter Notebook
      MIT License
      1523297Updated Apr 9, 2026Apr 9, 2026
    • JDLL

      Public
      The Java library to run Deep Learning models
      Java
      Apache License 2.0
      634140Updated Apr 8, 2026Apr 8, 2026
    • Python libraries for loading, running and packaging bioimage.io models
      Jupyter Notebook
      MIT License
      2135597Updated Apr 8, 2026Apr 8, 2026
    • Collaborative image annotation and model training with human in the loop
      Python
      MIT License
      0630Updated Nov 28, 2025Nov 28, 2025
    • hypha

      Public
      A serverless application framework for large-scale data management and AI model serving
      Python
      MIT License
      14001Updated Sep 3, 2025Sep 3, 2025
    • use-cases

      Public
      Drafting the use-cases for the publication
      Python
      MIT License
      3224Updated Jul 30, 2025Jul 30, 2025
    • Java
      Apache License 2.0
      0100Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      0000Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      0100Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      0000Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      0100Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      1200Updated Jul 22, 2025Jul 22, 2025
    • Java
      Apache License 2.0
      0200Updated Jul 22, 2025Jul 22, 2025
    • 0000Updated Jul 1, 2025Jul 1, 2025
    • Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
      CSS
      MIT License
      22607528Updated Jun 30, 2025Jun 30, 2025
    • A conda-smithy repository for bioimageio.spec.
      BSD 3-Clause "New" or "Revised" License
      3000Updated Jun 27, 2025Jun 27, 2025
    • Session 1: Creating, Uploading, Deploying and Containerizing BioImage Model Zoo Models
      Jupyter Notebook
      BSD 2-Clause "Simplified" License
      0100Updated May 27, 2025May 27, 2025
    • Development fork of bioimage-io/collection
      Python
      11000Updated Apr 25, 2025Apr 25, 2025
    • Your Personal Assistant in Computational Bioimaging.
      Jupyter Notebook
      MIT License
      134551Updated Mar 28, 2025Mar 28, 2025
    • bioengine

      Public
      Jupyter Notebook
      MIT License
      11331Updated Feb 10, 2025Feb 10, 2025
    • Svelte
      21220Updated Nov 17, 2024Nov 17, 2024
    • (deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO
      Python
      1056819Updated Jul 8, 2024Jul 8, 2024
    • Smarty
      MIT License
      2000Updated Jun 19, 2024Jun 19, 2024
    • Repository for hosting all resources and details related to the AI4Life and BioImage Model Zoo workshop scheduled for June 2024 in Madrid.o
      Jupyter Notebook
      MIT License
      2410Updated Jun 19, 2024Jun 19, 2024
    • Review service for bioimage.io uploader
      Python
      0050Updated Jun 18, 2024Jun 18, 2024
    • Python
      MIT License
      1000Updated Jun 18, 2024Jun 18, 2024
    • Python
      2351Updated Jun 12, 2024Jun 12, 2024
    • HTML
      0000Updated Jun 6, 2024Jun 6, 2024
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