fixed prettier in nf-core#247

Author: Daniel-VM

CHANGELOG.md

@@ -29,10 +29,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Dependencies`
 
-| Tool      | Previous version | New version |
-| --------- | ---------------- | ----------- |
-| Dragonflye| 1.1.2            | 1.2.1       |
-| Unicycler | 0.5.0            | 0.5.1       |
+| Tool       | Previous version | New version |
+| ---------- | ---------------- | ----------- |
+| Dragonflye | 1.1.2            | 1.2.1       |
+| Unicycler  | 0.5.0            | 0.5.1       |
 
 ### `Deprecated`
 
@@ -99,7 +99,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Added`
 
 - [#135](https://github.com/nf-core/bacass/pull/135) Implementation of KmerFinder subworkflow Custom Quast, and Custom MultiQC Reports:
-
   - Added KmerFinder subworkflow for read quality control, purity assessment, and sample grouping based on reference genome estimation.
   - Enhanced Quast Assembly QC to run both general and reference genome-based analyses when KmerFinder is invoked.
   - Implemented custom MultiQC module with multiqc_config.yml files for different assembly modes (short, long, hybrid).
@@ -219,7 +218,6 @@ This version merges the nf-core template updates of v2.9 and v2.10, and updates
 ### `Deprecated`
 
 - [#86](https://github.com/nf-core/bacass/pull/86) Replace depecated modules with nf-core/modules.
-
   - Replace `local/get_software_versions.nf` with `nf-core/custom/dumpsoftwareversions.nf`
   - Replace `local/skewer` by `nf-core/fastp` and wrap fastqc plus fastp into `subworkflows/nf-core/fastq_trim_fastp_fastqc`
 

docs/output.md

@@ -70,7 +70,6 @@ This step performs long read trimming on Nanopore input (if provided) using [Por
 <summary>Output files</summary>
 
 - `trimming/longreads/porechop`
-
   - `*.fastq.gz`: The trimmed FASTQ file
   - `*.log*`: Log file
 
@@ -92,7 +91,6 @@ Please refer to the documentation of [NanoPlot](https://github.com/wdecoster/Nan
 - `QC_Longreads/NanoPlot`: Various plots in HTML and PNG format
 
 - `QC_Longreads/PycoQC`
-
   - `*_pycoqc.html`: QC report in HTML format
   - `*_pycoqc.json`: QC report in JSON format
 
@@ -190,7 +188,6 @@ Long reads assemblies can be polished using [Medaka](https://github.com/nanopore
 <summary>Output files</summary>
 
 - `Medaka/*_polished_genome.fa`
-
   - `*_polished_genome.fa`: Polished consensus assembly in fasta format
   - `calls_to_draft.bam`: Alignment in bam format
   - `calls_to_draft.bam.bai`: Index of alignment
@@ -252,7 +249,6 @@ See [Prokka's documentation](https://github.com/tseemann/prokka#output-files) fo
 See [Baktas's documentation](https://github.com/oschwengers/bakta#output) for a full description of all output files.
 
 - `DFAST/{ID}_results/`
-
   - `genome.gff`: Annotation in gff format
   - `statistics.txt`: Annotation statistics in text format
   - `protein.faa`: Protein sequences in fasta format