.nftignore

.DS_Store
multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
multiqc/multiqc_data/multiqc.log
multiqc/multiqc_data/multiqc_data.json
multiqc/multiqc_data/multiqc_sources.{txt,yaml}
multiqc/multiqc_data/multiqc_software_versions.{txt,yaml}
multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
multiqc/multiqc_report.html
multiqc/multiqc_data/mqc_prokka_plot_1.yaml
multiqc/multiqc_data/multiqc_prokka.yaml
multiqc/multiqc_data/multiqc_general_stats.yaml
multiqc/multiqc_data/mqc_quast_num_contigs_1.yaml
multiqc/multiqc_data/multiqc_quast.yaml
multiqc/multiqc_data/porechop.yaml
fastqc/*_fastqc.{html,zip}
FastQC/raw/*.{html,zip}
FastQC/trim/*.{html,zip}
pipeline_info/*.{html,json,txt,yml}
busco/**
busco/*
trimming/shortreads/json_html/*.fastp.html
trimming/shortreads/log/*.fastp.log
trimming/longreads/porechop/*.porechop.log
Prokka/*/*.{gbk,sqn,log,err}
QUAST/report/**
Unicycler/*.unicycler.log
DFAST/*/*.{tsv,log,gbk}
QC_longreads/ToulligQC/**
QC_longreads/NanoPlot/*
Dragonflye/*
Medaka/*