diff --git a/.github/workflows/build_client.yaml b/.github/workflows/build_client.yaml index 93970c46061b..602fcaa666cc 100644 --- a/.github/workflows/build_client.yaml +++ b/.github/workflows/build_client.yaml @@ -38,5 +38,6 @@ jobs: if: steps.cache.outputs.cache-hit != 'true' env: GALAXY_PLUGIN_BUILD_FAIL_ON_ERROR: 1 + NODE_OPTIONS: --max-old-space-size=4096 run: make client working-directory: 'galaxy root' diff --git a/Makefile b/Makefile index 3fc70235084c..09416298f403 100644 --- a/Makefile +++ b/Makefile @@ -17,7 +17,7 @@ YARN_INSTALL_OPTS=--network-timeout 300000 --check-files GALAXY_PLUGIN_BUILD_FAIL_ON_ERROR?=0 # Respect predefined NODE_OPTIONS, otherwise set maximum heap size low for # compatibility with smaller machines. -NODE_OPTIONS ?= --max-old-space-size=3072 +NODE_OPTIONS ?= --max-old-space-size=4096 NODE_ENV = env NODE_OPTIONS=$(NODE_OPTIONS) GALAXY_PLUGIN_BUILD_FAIL_ON_ERROR=$(GALAXY_PLUGIN_BUILD_FAIL_ON_ERROR) CWL_TARGETS := test/functional/tools/cwl_tools/v1.0/conformance_tests.yaml \ test/functional/tools/cwl_tools/v1.1/conformance_tests.yaml \ @@ -235,7 +235,7 @@ client-lint-autofix: client-node-deps ## Automatically fix linting errors in cli client-format: client-node-deps client-lint-autofix ## Reformat client code, ensures autofixes are applied first $(IN_VENV) cd client && yarn run format -client-dev-server: client-node-deps ## Starts a webpack dev server for client development (HMR enabled) +client-dev-server: client-node-deps ## Starts a Vite dev server for client development (HMR enabled) $(IN_VENV) cd client && $(NODE_ENV) yarn run develop client-test: client-node-deps ## Run JS unit tests diff --git a/client/README.md b/client/README.md index 75e3ca1c30bf..bf1c22072bfa 100644 --- a/client/README.md +++ b/client/README.md @@ -59,8 +59,8 @@ Or, with the package scripts from this `client` directory: yarn run develop -This will start up an extra client development server running on port 8081. Open -your browser to `http://localhost:8081` (instead of the default 8080 that Galaxy +This will start up an extra client development server running on port 5173. Open +your browser to `http://localhost:5173` (instead of the default 8080 that Galaxy would run on), and you should see Galaxy like normal. Except now, when you change client code it'll automatically rebuild _and_ reload the relevant portion of the application for you. Lastly, if you are running Galaxy at a location @@ -76,7 +76,7 @@ also possible if you set the `CHANGE_ORIGIN` environment variable: You can also specify a particular port to bind the dev server to: - WEBPACK_PORT=8083 yarn run develop + VITE_PORT=8083 yarn run develop ## Running a Separate Server @@ -101,8 +101,8 @@ apply site-wide. On build, the compiled css bundle is served at `/static/dist/base.css`. -As mentioned above, `make client` will rebuild styles as a part of the webpack -build. For iterative development, "Watch Mode" rebuilds as described above do +As mentioned above, `make client` will rebuild styles as a part of the build +process. For iterative development, "Watch Mode" rebuilds as described above do include style changes. ## Client-Side Unit Testing diff --git a/client/babel.config.json b/client/babel.config.json deleted file mode 100644 index 185363035ee5..000000000000 --- a/client/babel.config.json +++ /dev/null @@ -1,8 +0,0 @@ -{ - "presets": ["@babel/preset-env", "@babel/preset-typescript"], - "env": { - "test": { - "plugins": ["@babel/plugin-transform-runtime", "babel-plugin-transform-import-meta"] - } - } -} diff --git a/client/build-config.shared.js b/client/build-config.shared.js new file mode 100644 index 000000000000..d13055d33a6f --- /dev/null +++ b/client/build-config.shared.js @@ -0,0 +1,59 @@ +/** + * Build configuration for Vite + * Single source of truth for legacy module resolution + */ +import path from "path"; +import { fileURLToPath } from "url"; + +const __dirname = path.dirname(fileURLToPath(import.meta.url)); +const scriptsBase = path.join(__dirname, "src"); +const libsBase = path.join(scriptsBase, "libs"); +const styleBase = path.join(scriptsBase, "style"); + +// Legacy exact-match aliases +export const legacyAliases = { + // Core libraries + // Note: jquery is NOT aliased - it resolves to node_modules/jquery directly + // The global setup (window.$, window.jQuery) is done in libs.js + jqueryVendor: path.join(libsBase, "jquery/jquery.js"), + storemodern: path.join(__dirname, "node_modules/store/dist/store.modern.js"), + + // Vue + vue: path.join(__dirname, "node_modules/vue/dist/vue.esm.js"), + + // Build config + config: path.join(scriptsBase, "config", process.env.NODE_ENV || "development") + ".js", + app: path.join(scriptsBase, "app.js"), +}; + +// Module resolution paths +export const modulePaths = [scriptsBase, "node_modules", styleBase]; + +// File extensions for resolution +export const extensions = [".ts", ".js", ".json", ".vue", ".scss"]; + +/** + * Get Vite-format aliases (uses regex patterns for exact matches) + */ +export function getViteAliases() { + const viteAliases = [ + // @ alias + { find: "@", replacement: scriptsBase }, + ]; + + // Add exact match patterns + for (const [key, value] of Object.entries(legacyAliases)) { + viteAliases.push({ + find: new RegExp(`^${key}$`), + replacement: path.isAbsolute(value) ? value : path.join(__dirname, value), + }); + } + + // Add prefix patterns for legacy paths + viteAliases.push( + { find: /^libs\//, replacement: libsBase + "/" }, + { find: /^ui\//, replacement: path.join(scriptsBase, "ui") + "/" }, + ); + + return viteAliases; +} diff --git a/client/gulpfile.js b/client/gulpfile.js index ac9cad1479d3..8fdedaf6a5fc 100644 --- a/client/gulpfile.js +++ b/client/gulpfile.js @@ -7,17 +7,7 @@ const buildIcons = require("./icons/build_icons"); const os = require("os"); const yaml = require("yaml"); -const PATHS = { - nodeModules: "./node_modules", - stagedLibraries: { - backbone: ["backbone.js", "backbone.js"], - jquery: ["dist/jquery.js", "jquery/jquery.js"], - "jquery-migrate": ["dist/jquery-migrate.js", "jquery/jquery.migrate.js"], - "jquery-mousewheel": ["jquery.mousewheel.js", "jquery/jquery.mousewheel.js"], - requirejs: ["require.js", "require.js"], - underscore: ["underscore.js", "underscore.js"], - }, -}; +const PATHS = {}; // Check if visualization steps should be skipped const SKIP_VIZ = process.env.SKIP_VIZ === "true" || process.env.SKIP_VIZ === "1"; @@ -44,26 +34,6 @@ try { VISUALIZATION_PLUGINS = {}; } -function stageLibs(callback) { - try { - Object.keys(PATHS.stagedLibraries).forEach((lib) => { - const p1 = path.resolve(path.join(PATHS.nodeModules, lib, PATHS.stagedLibraries[lib][0])); - const p2 = path.resolve(path.join("src", "libs", PATHS.stagedLibraries[lib][1])); - if (fs.existsSync(p1)) { - fs.removeSync(p2); - fs.createReadStream(p1).pipe(fs.createWriteStream(p2)); - } else { - throw new Error( - `${p1} does not exist, yet it is a required library. Check that the package in question exists in node_modules.`, - ); - } - }); - callback(); - } catch (err) { - callback(err); - } -} - async function icons() { await buildIcons("./src/assets/icons.json"); const generateIconsTypeScript = require("./icons/generate_ts_icons"); @@ -208,7 +178,7 @@ function forceInstallVisualizations(callback) { return installVisualizations(callback, true); } -const client = parallel(stageLibs, icons); +const client = icons; const plugins = series(installVisualizations, cleanPlugins, stagePlugins); const pluginsRebuild = series(forceInstallVisualizations, cleanPlugins, stagePlugins); diff --git a/client/package.json b/client/package.json index 8ae6cce855a4..63c6fa013406 100644 --- a/client/package.json +++ b/client/package.json @@ -21,8 +21,7 @@ ], "resolutions": { "chokidar": "3.5.3", - "vue": "2.7.16", - "vue-loader": "15.11.1" + "vue": "2.7.16" }, "dependencies": { "@citation-js/core": "^0.7.1", @@ -51,11 +50,9 @@ "ag-grid-vue": "^30", "assert": "^2.1.0", "axios": "^1.6.2", - "babel-runtime": "^6.26.0", "backbone": "1.5.0", "bootstrap": "4.6", "bootstrap-vue": "^2.23.0", - "core-js": "^3.33.1", "csv-parse": "^5.5.2", "d3": "^7.8.5", "d3-zoom": "^3.0.0", @@ -65,9 +62,9 @@ "dexie": "^3.2.5", "dom-to-image": "^2.6.0", "dompurify": "^3.0.6", - "dumpmeta-webpack-plugin": "^0.2.0", "echarts": "^5.5.1", "elkjs": "^0.8.2", + "events": "^3.3.0", "file-saver": "^2.0.5", "flush-promises": "^1.0.2", "font-awesome-6": "npm:@fortawesome/free-solid-svg-icons@6", @@ -88,7 +85,6 @@ "markdown-it": "^13.0.2", "markdown-it-regexp": "^0.4.0", "monaco-editor": "^0.52.2", - "monaco-editor-webpack-plugin": "^7.1.0", "monaco-yaml": "^5.4.0", "object-hash": "^3.0.0", "openapi-fetch": "^0.10.6", @@ -97,8 +93,6 @@ "pretty-bytes": "^6.1.1", "pyre-to-regexp": "^0.0.6", "querystring-es3": "^0.2.1", - "regenerator-runtime": "^0.14.0", - "requirejs": "2.3.7", "ro-crate-zip-explorer": "^0.4.1", "rxjs": "^7.8.1", "rxjs-spy": "^8.0.2", @@ -133,16 +127,12 @@ "yaml": "^2.6.1" }, "scripts": { - "develop": "NODE_ENV=development gulp && webpack-dev-server", - "build": "NODE_ENV=development gulp && webpack && yarn run stage-build", - "build-production": "NODE_ENV=production gulp && yarn run webpack-production && yarn run stage-build", - "build-production-maps": "NODE_ENV=production gulp && yarn run webpack-production-maps && yarn run stage-build", - "build-stats": "NODE_ENV=production webpack --profile --json=webpack-stats.json", - "view-stats": "webpack-bundle-analyzer webpack-stats.json ../static/dist/", - "webpack-production": "NODE_ENV=production webpack", - "webpack-production-maps": "GXY_BUILD_SOURCEMAPS=1 NODE_ENV=production webpack", + "develop": "NODE_ENV=development vite", + "build": "NODE_ENV=development gulp && vite build && yarn run stage-build", + "build-production": "NODE_ENV=production gulp && vite build && yarn run stage-build", + "build-production-maps": "GXY_BUILD_SOURCEMAPS=1 NODE_ENV=production gulp && vite build && yarn run stage-build", "gulp": "gulp", - "stage-build": "cpy 'dist/*' '../static/dist' && (git rev-parse HEAD 2>/dev/null || echo '') >../static/client_build_hash.txt", + "stage-build": "cpy 'dist/**/*' '../static/dist' && (git rev-parse HEAD 2>/dev/null || echo '') >../static/client_build_hash.txt", "format": "prettier --write . --cache", "format-check": "prettier --check .", "prettier": "yarn run format", @@ -155,12 +145,9 @@ "type-check": "vue-tsc --noEmit" }, "devDependencies": { - "@babel/core": "^7.23.2", - "@babel/helper-validator-identifier": "^7.22.20", - "@babel/plugin-transform-runtime": "^7.23.2", - "@babel/preset-env": "^7.23.2", - "@babel/preset-typescript": "^7.23.2", + "@modyfi/vite-plugin-yaml": "^1.1.1", "@pinia/testing": "0.1.3", + "@rollup/plugin-inject": "^5.0.5", "@testing-library/jest-dom": "^6.4.8", "@types/d3": "^7.4.2", "@types/dompurify": "^3.0.2", @@ -172,63 +159,40 @@ "@typescript-eslint/eslint-plugin": "^6.8.0", "@typescript-eslint/parser": "^6.8.0", "@vitejs/plugin-vue2": "^2.3.4", - "@vitest/coverage-v8": "^4.0.13", - "@vitest/ui": "^4.0.13", + "@vitest/coverage-v8": "^4.0.14", + "@vitest/ui": "^4.0.14", "@vue/test-utils": "^1.3.6", "@vue/tsconfig": "^0.4.0", - "amdi18n-loader": "^0.9.4", "autoprefixer": "10.4.16", "axios-mock-adapter": "^1.22.0", - "babel-plugin-transform-import-meta": "^2.2.1", "buffer": "^6.0.3", - "circular-dependency-plugin": "^5.2.2", "cpy-cli": "^5.0.0", - "css-loader": "^7.1.2", - "css-minimizer-webpack-plugin": "^5.0.1", "eslint": "^8.52.0", "eslint-plugin-compat": "^4.2.0", "eslint-plugin-import": "^2.28.1", "eslint-plugin-simple-import-sort": "^10.0.0", "eslint-plugin-vue": "^9.17.0", "eslint-plugin-vuejs-accessibility": "^2.2.0", - "expose-loader": "^5.0.1", "fake-indexeddb": "^6.0.0", - "fork-ts-checker-webpack-plugin": "^9.0.2", "fs-extra": "^11.2.0", "gulp": "^5.0.0", "happy-dom": "^20.0.10", - "ignore-loader": "^0.1.2", - "imports-loader": "^5.0.0", - "json-loader": "^0.5.7", - "mini-css-extract-plugin": "^2.9.2", "msw": "^2.3.4", "openapi-msw": "^0.7.0", "openapi-typescript": "^7.3.0", - "postcss-loader": "^7.3.3", "prettier": "^3.6.2", - "process": "^0.11.10", - "raw-loader": "^4.0.2", "sass": "^1.94.2", - "sass-loader": "^16.0.5", "store": "^2.0.12", - "thread-loader": "^4.0.4", - "ts-loader": "^9.5.2", - "tsconfig-paths-webpack-plugin": "^4.1.0", "typescript": "^5.7.3", "vite": "^7.2.4", - "vitest": "^4.0.13", + "vite-tsconfig-paths": "^5.1.4", + "vitest": "^4.0.14", "vitest-fail-on-console": "^0.10.1", "vitest-location-mock": "^1.0.4", - "vue-loader": "^15.11.1", "vue-template-compiler": "^2.7.16", "vue-tsc": "2.2.12", - "webpack": "^5.98.0", - "webpack-cli": "^6.0.1", - "webpack-dev-server": "^5.2.0", - "webpack-merge": "^6.0.1", "xml-js": "^1.6.11", - "xml2js": "^0.6.2", - "yaml-loader": "^0.8.1" + "xml2js": "^0.6.2" }, "peerDependencies": { "postcss": "^8.4.6" diff --git a/client/src/components/AboutGalaxy.vue b/client/src/components/AboutGalaxy.vue index 1da6ef70167f..3e2a7b5a3c13 100644 --- a/client/src/components/AboutGalaxy.vue +++ b/client/src/components/AboutGalaxy.vue @@ -1,6 +1,6 @@ diff --git a/client/src/entry/analysis/router.js b/client/src/entry/analysis/router.js index 260d10d16ad6..7b90b758e82f 100644 --- a/client/src/entry/analysis/router.js +++ b/client/src/entry/analysis/router.js @@ -66,6 +66,10 @@ import PageView from "@/components/Page/PageView.vue"; import PageForm from "@/components/PageDisplay/PageForm.vue"; import PageEditor from "@/components/PageEditor/PageEditor.vue"; import Sharing from "@/components/Sharing/SharingPage.vue"; +// TODO: CustomToolEditor should be lazy-loaded to reduce bundle size (~7MB with Monaco). +// Vue Router 3.x async component loading doesn't work correctly with Vite. +// Revisit when migrating to Vue Router 4 / Vue 3. +import CustomToolEditor from "@/components/Tool/CustomToolEditor.vue"; import ToolReport from "@/components/Tool/ToolReport.vue"; import ToolSuccess from "@/components/Tool/ToolSuccess.vue"; import ToolOntologies from "@/components/ToolsList/ToolOntologies.vue"; @@ -105,21 +109,6 @@ import WorkflowEditorModule from "@/entry/analysis/modules/WorkflowEditor.vue"; Vue.use(VueRouter); -// Async component for CustomToolEditor to reduce bundle size -// NOTE: We use the full async component factory pattern instead of simple dynamic imports -// (i.e., `() => import("@/components/Tool/CustomToolEditor.vue")`) due to what I think are router limitations. Revisit with vr-4 -const CustomToolEditor = () => ({ - component: import("@/components/Tool/CustomToolEditor.vue"), - loading: { - template: '
Loading Tool Editor...
', - }, - error: { - template: '
Failed to load Tool Editor
', - }, - delay: 200, - timeout: 10000, -}); - // patches $router.push() to trigger an event and hide duplication warnings patchRouterPush(VueRouter); diff --git a/client/src/entry/libs.js b/client/src/entry/libs.js new file mode 100644 index 000000000000..ba52005376cc --- /dev/null +++ b/client/src/entry/libs.js @@ -0,0 +1,31 @@ +/** + * libs.bundled.js entry point + * This must be loaded BEFORE the app bundles (analysis, generic) + * + * It exposes required globals to window for: + * - jQuery plugins that expect window.$ and window.jQuery + * - Backbone code that expects global underscore + */ + +// Backbone - expose globally for legacy code +import Backbone from "backbone"; +// Buffer polyfill - some dependencies expect Buffer to be globally available +import { Buffer } from "buffer"; +// jQuery - import directly from the package +// Note: We import from "jquery" directly, not via jquery.custom.js, +// to avoid code-splitting issues with Rollup/Vite +import jQuery from "jquery"; +// Underscore - expose to window for Backbone and legacy code +import _ from "underscore"; + +window.Buffer = Buffer; +window._ = _; +window.Backbone = Backbone; + +// Expose jQuery globally - this must happen before jquery-migrate loads +window.$ = jQuery; +window.jQuery = jQuery; + +// jquery-migrate - must be imported AFTER setting window.jQuery +// Using dynamic import to ensure globals are set first +import("jquery-migrate"); diff --git a/client/src/libs/bbi/bigwig.js b/client/src/libs/bbi/bigwig.js deleted file mode 100644 index 81946cb65630..000000000000 --- a/client/src/libs/bbi/bigwig.js +++ /dev/null @@ -1,1190 +0,0 @@ -// -// Author: Jeremy Goecks -// -// Modified from: -// -// Dalliance Genome Explorer -// (c) Thomas Down 2006-2010 -// -// bigwig.js: indexed binary WIG (and BED) files -// - -// Requirements: -// * jquery and ajax-native plugin for reading binary data, jquery for promises -// * spans for working working with genomic intervals -// * jszlib for decompression. -define(["libs/bbi/spans", "libs/bbi/jszlib", "libs/bbi/jquery-ajax-native"], function(spans, jszlib) { - "use strict"; - - // -- Copied from das.js -- - - function DASFeature() { - } - - function DASGroup(id) { - if (id) - this.id = id; - } - - // -- End copy -- - - // -- Copied from bin.js -- - - function readInt(ba, offset) { - return (ba[offset + 3] << 24) | (ba[offset + 2] << 16) | (ba[offset + 1] << 8) | (ba[offset]); - } - - // -- End copy -- - - // Some globals. - var Range = spans.Range; - var union = spans.union; - var intersection = spans.intersection; - - var jszlib_inflate_buffer = jszlib.inflateBuffer; - var arrayCopy = jszlib.arrayCopy; - - var BIG_WIG_MAGIC = 0x888FFC26; - var BIG_WIG_MAGIC_BE = 0x26FC8F88; - var BIG_BED_MAGIC = 0x8789F2EB; - var BIG_BED_MAGIC_BE = 0xEBF28987; - - - var BIG_WIG_TYPE_GRAPH = 1; - var BIG_WIG_TYPE_VSTEP = 2; - var BIG_WIG_TYPE_FSTEP = 3; - - var M1 = 256; - var M2 = 256*256; - var M3 = 256*256*256; - var M4 = 256*256*256*256; - - var BED_COLOR_REGEXP = new RegExp("^[0-9]+,[0-9]+,[0-9]+"); - - /** - * Read binary data from a URL using HTTP Range header. Requires jQuery and ajax-native plugin. - */ - function read(url, start, size) { - // Taken from bin.js: - // This may be necessary for Safari: - // if ((isSafari || this.opts.salt) && url.indexOf('?') < 0) { - // url = url + '?salt=' + b64_sha1('' + Date.now() + ',' + (++seed)); - // } - - var chunkSizeLimit = Math.pow(10, 6); // 1 MB - if(size > chunkSizeLimit) { - // TODO: raise error. - } - - // Read data from remote file. - return $.ajax({ - type: 'GET', - dataType: 'native', - url: url, - // Potential timeout on first request to catch mixed-content errors on Chromium. - timeout: 5000, - beforeSend: function(xhrObj) { - // (size - 1) because range is inclusive. - xhrObj.setRequestHeader("Range", "bytes=" + start + "-" + (start + (size - 1))); - }, - xhrFields: { - responseType: 'arraybuffer' - } - }); - } - - function bwg_readOffset(ba, o) { - var offset = ba[o] + ba[o+1]*M1 + ba[o+2]*M2 + ba[o+3]*M3 + ba[o+4]*M4; - return offset; - } - - function BigWig() { - } - - /** - * Read the chromosome B+ tree header. - */ - BigWig.prototype.readChromTree = function() { - var thisB = this; - this.chromsToIDs = {}; - this.idsToChroms = {}; - this.maxID = 0; - - var udo = this.unzoomedDataOffset; - var eb = (udo - this.chromTreeOffset) & 3; - udo = udo + 4 - eb; - - // Read and parse the chrom tree, return the promise so that subsequent actions can be taken. - return $.when(read(this.url, this.chromTreeOffset, udo - this.chromTreeOffset)).then(function(bpt) { - var ba = new Uint8Array(bpt); - var sa = new Int16Array(bpt); - var la = new Int32Array(bpt); - var bptMagic = la[0]; - var blockSize = la[1]; - var keySize = la[2]; - var valSize = la[3]; - var itemCount = bwg_readOffset(ba, 16); - var rootNodeOffset = 32; - - var bptReadNode = function(offset) { - var nodeType = ba[offset]; - var cnt = sa[(offset/2) + 1]; - offset += 4; - for (var n = 0; n < cnt; ++n) { - if (nodeType === 0) { - offset += keySize; - var childOffset = bwg_readOffset(ba, offset); - offset += 8; - childOffset -= thisB.chromTreeOffset; - bptReadNode(childOffset); - } else { - var key = ''; - for (var ki = 0; ki < keySize; ++ki) { - var charCode = ba[offset++]; - if (charCode !== 0) { - key += String.fromCharCode(charCode); - } - } - var chromId = (ba[offset+3]<<24) | (ba[offset+2]<<16) | (ba[offset+1]<<8) | (ba[offset+0]); - var chromSize = (ba[offset + 7]<<24) | (ba[offset+6]<<16) | (ba[offset+5]<<8) | (ba[offset+4]); - offset += 8; - - thisB.chromsToIDs[key] = chromId; - if (key.indexOf('chr') === 0) { - thisB.chromsToIDs[key.substr(3)] = chromId; - } - thisB.idsToChroms[chromId] = key; - thisB.maxID = Math.max(thisB.maxID, chromId); - } - } - }; - bptReadNode(rootNodeOffset); - }); - } - - function BigWigView(bwg, cirTreeOffset, cirTreeLength, isSummary) { - this.bwg = bwg; - this.cirTreeOffset = cirTreeOffset; - this.cirTreeLength = cirTreeLength; - this.isSummary = isSummary; - } - - - - BigWigView.prototype.readWigData = function(chrName, min, max) { - var chr = this.bwg.chromsToIDs[chrName], - rval; - if (chr === undefined) { - // Not an error because some .bwgs won't have data for all chromosomes. - rval = []; - } else { - rval = this.readWigDataById(chr, min, max); - } - - return rval; - }; - - BigWigView.prototype.readWigDataById = function(chr, min, max) { - var thisB = this, - promise = $.Deferred(); - - // Read the R-tree index header and then read data again. - if (!this.cirHeader) { - $.when(read(thisB.bwg.url, this.cirTreeOffset, 48)).then(function(result) { - thisB.cirHeader = result; - var la = new Int32Array(thisB.cirHeader); - thisB.cirBlockSize = la[1]; - $.when(thisB.readWigDataById(chr, min, max)).then(function(result) { - promise.resolve(result); - }); - }); - return promise; - } - - var blocksToFetch = []; - var outstanding = 0; - - var beforeBWG = Date.now(); - - var filter = function(chromId, fmin, fmax, toks) { - return ((chr < 0 || chromId == chr) && fmin <= max && fmax >= min); - }; - - var cirFobRecur = function(offset, level) { - if (thisB.bwg.instrument) - console.log('level=' + level + '; offset=' + offset + '; time=' + (Date.now()|0)); - - outstanding += offset.length; - - if (offset.length == 1 && offset[0] - thisB.cirTreeOffset == 48 && thisB.cachedCirRoot) { - cirFobRecur2(thisB.cachedCirRoot, 0, level); - --outstanding; - if (outstanding === 0) { - $.when(thisB.fetchFeatures(filter, blocksToFetch)).then(function(result) { - promise.resolve(result); - }); - } - return; - } - - var maxCirBlockSpan = 4 + (thisB.cirBlockSize * 32); // Upper bound on size, based on a completely full leaf node. - var spans; - for (var i = 0; i < offset.length; ++i) { - var blockSpan = new Range(offset[i], offset[i] + maxCirBlockSpan); - spans = spans ? union(spans, blockSpan) : blockSpan; - } - - var fetchRanges = spans.ranges(); - for (var r = 0; r < fetchRanges.length; ++r) { - var fr = fetchRanges[r]; - cirFobStartFetch(offset, fr, level); - } - }; - - var cirFobStartFetch = function(offset, fr, level, attempts) { - var length = fr.max() - fr.min(); - $.when(read(thisB.bwg.url, fr.min(), fr.max() - fr.min())).then(function(resultBuffer) { - for (var i = 0; i < offset.length; ++i) { - if (fr.contains(offset[i])) { - cirFobRecur2(resultBuffer, offset[i] - fr.min(), level); - - if (offset[i] - thisB.cirTreeOffset == 48 && offset[i] - fr.min() === 0) - thisB.cachedCirRoot = resultBuffer; - - --outstanding; - if (outstanding === 0) { - $.when(thisB.fetchFeatures(filter, blocksToFetch)).then(function(result) { - promise.resolve(result); - }); - } - } - } - }); - }; - - var cirFobRecur2 = function(cirBlockData, offset, level) { - var ba = new Uint8Array(cirBlockData); - var sa = new Int16Array(cirBlockData); - var la = new Int32Array(cirBlockData); - - var isLeaf = ba[offset]; - var cnt = sa[offset/2 + 1]; - offset += 4; - - if (isLeaf !== 0) { - for (var i = 0; i < cnt; ++i) { - var lo = offset/4; - var startChrom = la[lo]; - var startBase = la[lo + 1]; - var endChrom = la[lo + 2]; - var endBase = la[lo + 3]; - var blockOffset = bwg_readOffset(ba, offset+16); - var blockSize = bwg_readOffset(ba, offset+24); - if (((chr < 0 || startChrom < chr) || (startChrom == chr && startBase <= max)) && - ((chr < 0 || endChrom > chr) || (endChrom == chr && endBase >= min))) - { - blocksToFetch.push({offset: blockOffset, size: blockSize}); - } - offset += 32; - } - } else { - var recurOffsets = []; - for (var i = 0; i < cnt; ++i) { - var lo = offset/4; - var startChrom = la[lo]; - var startBase = la[lo + 1]; - var endChrom = la[lo + 2]; - var endBase = la[lo + 3]; - var blockOffset = bwg_readOffset(ba, offset+16); - if ((chr < 0 || startChrom < chr || (startChrom == chr && startBase <= max)) && - (chr < 0 || endChrom > chr || (endChrom == chr && endBase >= min))) - { - recurOffsets.push(blockOffset); - } - offset += 24; - } - if (recurOffsets.length > 0) { - cirFobRecur(recurOffsets, level + 1); - } - } - }; - - cirFobRecur([thisB.cirTreeOffset + 48], 1); - return promise; - }; - - /** - * Fetch data for a set of blocks. Returns a promise that resolves to fetched data. - */ - BigWigView.prototype.fetchFeatures = function(filter, blocksToFetch) { - var thisB = this, - promise = $.Deferred(); - - blocksToFetch.sort(function(b0, b1) { - return (b0.offset|0) - (b1.offset|0); - }); - - if (blocksToFetch.length === 0) { - return []; - } else { - var features = []; - var createFeature = function(chr, fmin, fmax, opts) { - if (!opts) { - opts = {}; - } - - var f = new DASFeature(); - f._chromId = chr; - f.segment = thisB.bwg.idsToChroms[chr]; - f.min = fmin; - f.max = fmax; - f.type = thisB.bwg.type; - - for (var k in opts) { - f[k] = opts[k]; - } - - features.push(f); - }; - - // Recursive function to read blocks of data. - var tramp = function() { - if (blocksToFetch.length === 0) { - var afterBWG = Date.now(); - // dlog('BWG fetch took ' + (afterBWG - beforeBWG) + 'ms'); - return promise.resolve(features); - } - else { - var block = blocksToFetch[0]; - if (block.data) { - thisB.parseFeatures(block.data, createFeature, filter); - blocksToFetch.splice(0, 1); - tramp(); - } - else { - var fetchStart = block.offset; - var fetchSize = block.size; - var bi = 1; - while (bi < blocksToFetch.length && blocksToFetch[bi].offset == (fetchStart + fetchSize)) { - fetchSize += blocksToFetch[bi].size; - ++bi; - } - - $.when(read(thisB.bwg.url, fetchStart, fetchSize)).then(function(result) { - var offset = 0; - var bi = 0; - while (offset < fetchSize) { - var fb = blocksToFetch[bi]; - - var data; - if (thisB.bwg.uncompressBufSize > 0) { - data = jszlib_inflate_buffer(result, offset + 2, fb.size - 2); - } else { - var tmp = new Uint8Array(fb.size); // FIXME is this really the best we can do? - arrayCopy(new Uint8Array(result, offset, fb.size), 0, tmp, 0, fb.size); - data = tmp.buffer; - } - fb.data = data; - - offset += fb.size; - ++bi; - } - tramp(); - }); - } - } - }; - tramp(); - } - - return promise; - }; - - BigWigView.prototype.parseFeatures = function(data, createFeature, filter) { - var ba = new Uint8Array(data); - - if (this.isSummary) { - var sa = new Int16Array(data); - var la = new Int32Array(data); - var fa = new Float32Array(data); - - var itemCount = data.byteLength/32; - for (var i = 0; i < itemCount; ++i) { - var chromId = la[(i*8)]; - var start = la[(i*8)+1]; - var end = la[(i*8)+2]; - var validCnt = la[(i*8)+3]; - var minVal = fa[(i*8)+4]; - var maxVal = fa[(i*8)+5]; - var sumData = fa[(i*8)+6]; - var sumSqData = fa[(i*8)+7]; - - if (filter(chromId, start + 1, end)) { - var summaryOpts = {type: 'bigwig', score: sumData/validCnt, maxScore: maxVal}; - if (this.bwg.type == 'bigbed') { - summaryOpts.type = 'density'; - } - createFeature(chromId, start + 1, end, summaryOpts); - } - } - } - else if (this.bwg.type == 'bigwig') { - var sa = new Int16Array(data); - var la = new Int32Array(data); - var fa = new Float32Array(data); - - var chromId = la[0]; - var blockStart = la[1]; - var blockEnd = la[2]; - var itemStep = la[3]; - var itemSpan = la[4]; - var blockType = ba[20]; - var itemCount = sa[11]; - - if (blockType == BIG_WIG_TYPE_FSTEP) { - for (var i = 0; i < itemCount; ++i) { - var score = fa[i + 6]; - var fmin = blockStart + (i*itemStep) + 1, fmax = blockStart + (i*itemStep) + itemSpan; - if (filter(chromId, fmin, fmax)) - createFeature(chromId, fmin, fmax, {score: score}); - } - } else if (blockType == BIG_WIG_TYPE_VSTEP) { - for (var i = 0; i < itemCount; ++i) { - var start = la[(i*2) + 6] + 1; - var end = start + itemSpan - 1; - var score = fa[(i*2) + 7]; - if (filter(chromId, start, end)) - createFeature(chromId, start, end, {score: score}); - } - } else if (blockType == BIG_WIG_TYPE_GRAPH) { - for (var i = 0; i < itemCount; ++i) { - var start = la[(i*3) + 6] + 1; - var end = la[(i*3) + 7]; - var score = fa[(i*3) + 8]; - if (start > end) { - start = end; - } - if (filter(chromId, start, end)) - createFeature(chromId, start, end, {score: score}); - } - } else { - console.log('Currently not handling bwgType=' + blockType); - } - } else if (this.bwg.type == 'bigbed') { - var offset = 0; - var dfc = this.bwg.definedFieldCount; - var schema = this.bwg.schema; - - while (offset < ba.length) { - var chromId = (ba[offset+3]<<24) | (ba[offset+2]<<16) | (ba[offset+1]<<8) | (ba[offset+0]); - var start = (ba[offset+7]<<24) | (ba[offset+6]<<16) | (ba[offset+5]<<8) | (ba[offset+4]); - var end = (ba[offset+11]<<24) | (ba[offset+10]<<16) | (ba[offset+9]<<8) | (ba[offset+8]); - offset += 12; - var rest = ''; - while (true) { - var ch = ba[offset++]; - if (ch != 0) { - rest += String.fromCharCode(ch); - } else { - break; - } - } - - var featureOpts = {}; - - var bedColumns; - if (rest.length > 0) { - bedColumns = rest.split('\t'); - } else { - bedColumns = []; - } - if (bedColumns.length > 0 && dfc > 3) { - featureOpts.label = bedColumns[0]; - } - if (bedColumns.length > 1 && dfc > 4) { - var score = parseInt(bedColumns[1]); - if (!isNaN(score)) - featureOpts.score = score; - } - if (bedColumns.length > 2 && dfc > 5) { - featureOpts.orientation = bedColumns[2]; - } - if (bedColumns.length > 5 && dfc > 8) { - var color = bedColumns[5]; - if (BED_COLOR_REGEXP.test(color)) { - featureOpts.itemRgb = 'rgb(' + color + ')'; - } - } - - if (bedColumns.length > dfc-3 && schema) { - for (var col = dfc - 3; col < bedColumns.length; ++col) { - featureOpts[schema.fields[col+3].name] = bedColumns[col]; - } - } - - if (filter(chromId, start + 1, end, bedColumns)) { - if (dfc < 12) { - createFeature(chromId, start + 1, end, featureOpts); - } else { - // TODO: add block starts, sizes, thick start, thick end to feature. - var thickStart = bedColumns[3]|0; - var thickEnd = bedColumns[4]|0; - var blockCount = bedColumns[6]|0; - var blockSizes = bedColumns[7].split(','); - var blockStarts = bedColumns[8].split(','); - - if (featureOpts.exonFrames) { - var exonFrames = featureOpts.exonFrames.split(','); - featureOpts.exonFrames = undefined; - } - - featureOpts.type = 'transcript' - var grp = new DASGroup(); - for (var k in featureOpts) { - grp[k] = featureOpts[k]; - } - grp.id = bedColumns[0]; - grp.segment = this.bwg.idsToChroms[chromId]; - grp.min = start + 1; - grp.max = end; - grp.notes = []; - featureOpts.groups = [grp]; - - // Moving towards using bigGenePred model, but will - // still support old Dalliance-style BED12+gene-name for the - // foreseeable future. - if (bedColumns.length > 9) { - var geneId = featureOpts.geneName || bedColumns[9]; - var geneName = geneId; - if (bedColumns.length > 10) { - geneName = bedColumns[10]; - } - if (featureOpts.geneName2) - geneName = featureOpts.geneName2; - - var gg = $.extend({}, grp); - gg.id = geneId; - gg.label = geneName; - gg.type = 'gene'; - featureOpts.groups.push(gg); - } - - var spanList = []; - for (var b = 0; b < blockCount; ++b) { - var bmin = (blockStarts[b]|0) + start; - var bmax = bmin + (blockSizes[b]|0); - var span = new Range(bmin, bmax); - spanList.push(span); - } - var spans = union(spanList); - - var tsList = spans.ranges(); - for (var s = 0; s < tsList.length; ++s) { - var ts = tsList[s]; - createFeature(chromId, ts.min() + 1, ts.max(), featureOpts); - } - - if (thickEnd > thickStart) { - var codingRegion = (featureOpts.orientation == '+') ? - new Range(thickStart, thickEnd + 3) : - new Range(thickStart - 3, thickEnd); - // +/- 3 to account for stop codon - - var tl = intersection(spans, codingRegion); - if (tl) { - featureOpts.type = 'translation'; - var tlList = tl.ranges(); - var readingFrame = 0; - - var tlOffset = 0; - while (tlList[0].min() > tsList[tlOffset].max()) - tlOffset++; - - for (var s = 0; s < tlList.length; ++s) { - // Record reading frame for every exon - var index = s; - if (featureOpts.orientation == '-') - index = tlList.length - s - 1; - var ts = tlList[index]; - featureOpts.readframe = readingFrame; - if (exonFrames) { - var brf = parseInt(exonFrames[index + tlOffset]); - if (typeof(brf) === 'number' && brf >= 0 && brf <= 2) { - featureOpts.readframe = brf; - featureOpts.readframeExplicit = true; - } - } - var length = ts.max() - ts.min(); - readingFrame = (readingFrame + length) % 3; - createFeature(chromId, ts.min() + 1, ts.max(), featureOpts); - } - } - } - } - } - } - } else { - throw Error("Don't know what to do with " + this.bwg.type); - } - } - - // - // nasty cut/paste, should roll back in! - // - - BigWigView.prototype.getFirstAdjacent = function(chrName, pos, dir, callback) { - var chr = this.bwg.chromsToIDs[chrName]; - if (chr === undefined) { - // Not an error because some .bwgs won't have data for all chromosomes. - return callback([]); - } else { - this.getFirstAdjacentById(chr, pos, dir, callback); - } - } - - BigWigView.prototype.getFirstAdjacentById = function(chr, pos, dir, callback) { - var thisB = this; - if (!this.cirHeader) { - this.bwg.data.slice(this.cirTreeOffset, 48).fetch(function(result) { - thisB.cirHeader = result; - var la = new Int32Array(thisB.cirHeader); - thisB.cirBlockSize = la[1]; - thisB.getFirstAdjacentById(chr, pos, dir, callback); - }); - return; - } - - var blockToFetch = null; - var bestBlockChr = -1; - var bestBlockOffset = -1; - - var outstanding = 0; - - var beforeBWG = Date.now(); - - var cirFobRecur = function(offset, level) { - outstanding += offset.length; - - var maxCirBlockSpan = 4 + (thisB.cirBlockSize * 32); // Upper bound on size, based on a completely full leaf node. - var spans; - for (var i = 0; i < offset.length; ++i) { - var blockSpan = new Range(offset[i], offset[i] + maxCirBlockSpan); - spans = spans ? union(spans, blockSpan) : blockSpan; - } - - var fetchRanges = spans.ranges(); - for (var r = 0; r < fetchRanges.length; ++r) { - var fr = fetchRanges[r]; - cirFobStartFetch(offset, fr, level); - } - } - - var cirFobStartFetch = function(offset, fr, level, attempts) { - var length = fr.max() - fr.min(); - thisB.bwg.data.slice(fr.min(), fr.max() - fr.min()).fetch(function(resultBuffer) { - for (var i = 0; i < offset.length; ++i) { - if (fr.contains(offset[i])) { - cirFobRecur2(resultBuffer, offset[i] - fr.min(), level); - --outstanding; - if (outstanding == 0) { - if (!blockToFetch) { - if (dir > 0 && (chr != 0 || pos > 0)) { - return thisB.getFirstAdjacentById(0, 0, dir, callback); - } else if (dir < 0 && (chr != thisB.bwg.maxID || pos < 1000000000)) { - return thisB.getFirstAdjacentById(thisB.bwg.maxID, 1000000000, dir, callback); - } - return callback([]); - } - - thisB.fetchFeatures(function(chrx, fmin, fmax, toks) { - return (dir < 0 && (chrx < chr || fmax < pos)) || (dir > 0 && (chrx > chr || fmin > pos)); - }, [blockToFetch], function(features) { - var bestFeature = null; - var bestChr = -1; - var bestPos = -1; - for (var fi = 0; fi < features.length; ++fi) { - var f = features[fi]; - var chrx = f._chromId, fmin = f.min, fmax = f.max; - if (bestFeature == null || ((dir < 0) && (chrx > bestChr || fmax > bestPos)) || ((dir > 0) && (chrx < bestChr || fmin < bestPos))) { - bestFeature = f; - bestPos = (dir < 0) ? fmax : fmin; - bestChr = chrx; - } - } - - if (bestFeature != null) - return callback([bestFeature]); - else - return callback([]); - }); - } - } - } - }); - } - - var cirFobRecur2 = function(cirBlockData, offset, level) { - var ba = new Uint8Array(cirBlockData); - var sa = new Int16Array(cirBlockData); - var la = new Int32Array(cirBlockData); - - var isLeaf = ba[offset]; - var cnt = sa[offset/2 + 1]; - offset += 4; - - if (isLeaf != 0) { - for (var i = 0; i < cnt; ++i) { - var lo = offset/4; - var startChrom = la[lo]; - var startBase = la[lo + 1]; - var endChrom = la[lo + 2]; - var endBase = la[lo + 3]; - var blockOffset = bwg_readOffset(ba, offset+16); - var blockSize = bwg_readOffset(ba, offset+24); - if ((dir < 0 && ((startChrom < chr || (startChrom == chr && startBase <= pos)))) || - (dir > 0 && ((endChrom > chr || (endChrom == chr && endBase >= pos))))) - { - // console.log('Got an interesting block: startBase=' + startChrom + ':' + startBase + '; endBase=' + endChrom + ':' + endBase + '; offset=' + blockOffset + '; size=' + blockSize); - if (/_random/.exec(thisB.bwg.idsToChroms[startChrom])) { - // dlog('skipping random: ' + thisB.bwg.idsToChroms[startChrom]); - } else if (blockToFetch == null || ((dir < 0) && (endChrom > bestBlockChr || (endChrom == bestBlockChr && endBase > bestBlockOffset)) || - (dir > 0) && (startChrom < bestBlockChr || (startChrom == bestBlockChr && startBase < bestBlockOffset)))) - { - // dlog('best is: startBase=' + startChrom + ':' + startBase + '; endBase=' + endChrom + ':' + endBase + '; offset=' + blockOffset + '; size=' + blockSize); - blockToFetch = {offset: blockOffset, size: blockSize}; - bestBlockOffset = (dir < 0) ? endBase : startBase; - bestBlockChr = (dir < 0) ? endChrom : startChrom; - } - } - offset += 32; - } - } else { - var bestRecur = -1; - var bestPos = -1; - var bestChr = -1; - for (var i = 0; i < cnt; ++i) { - var lo = offset/4; - var startChrom = la[lo]; - var startBase = la[lo + 1]; - var endChrom = la[lo + 2]; - var endBase = la[lo + 3]; - var blockOffset = (la[lo + 4]<<32) | (la[lo + 5]); - if ((dir < 0 && ((startChrom < chr || (startChrom == chr && startBase <= pos)) && - (endChrom >= chr))) || - (dir > 0 && ((endChrom > chr || (endChrom == chr && endBase >= pos)) && - (startChrom <= chr)))) - { - if (bestRecur < 0 || endBase > bestPos) { - bestRecur = blockOffset; - bestPos = (dir < 0) ? endBase : startBase; - bestChr = (dir < 0) ? endChrom : startChrom; - } - } - offset += 24; - } - if (bestRecur >= 0) { - cirFobRecur([bestRecur], level + 1); - } - } - }; - - - cirFobRecur([thisB.cirTreeOffset + 48], 1); - } - - /** - * Automatically choose a zoom level and return data from that level. - */ - BigWig.prototype.readWigData = function(chrName, min, max) { - // Maximum number of data points to return when reading a bigwig. This is used - // to choose the appropriate level. One data point ~= 25-65 bytes. - // FIXME: For targeted sequencing, data points returned is going to be much lower, - // so this will need to be tuned appropriately. - var MAX_DATA_POINTS = 25000; - - var range = max - min, - view; - // If no zooming needed or available (common in bigbed), use unzoomed view. - if (range <= MAX_DATA_POINTS || this.zoomLevels.length === 0) { - view = this.getUnzoomedView(); - } - else { - // Find reasonable zoom level. Reduction is the # of bases represented - // by each data point at that level. - for (var i = 0; i < this.zoomLevels.length; i++) { - if (range/this.zoomLevels[i].reduction < MAX_DATA_POINTS) { - view = this.getZoomedView(i); - break; - } - } - } - - return view.readWigData(chrName, min, max); - } - - BigWig.prototype.getUnzoomedView = function() { - if (!this.unzoomedView) { - var cirLen = 4000; - var nzl = this.zoomLevels[0]; - if (nzl) { - cirLen = this.zoomLevels[0].dataOffset - this.unzoomedIndexOffset; - } - this.unzoomedView = new BigWigView(this, this.unzoomedIndexOffset, cirLen, false); - } - return this.unzoomedView; - } - - BigWig.prototype.getZoomedView = function(z) { - var zh = this.zoomLevels[z]; - if (!zh.view) { - zh.view = new BigWigView(this, zh.indexOffset, /* this.zoomLevels[z + 1].dataOffset - zh.indexOffset */ 4000, true); - } - return zh.view; - } - - /** - * Create a BigWig object using a URL to a bigwig/bigbed file. Returns a promise - * that resolves to the object when it's available. - */ - function makeBwg(url) { - var promise = $.Deferred(), - bwg = new BigWig(); - bwg.url = url; - - // Read and parse bigwig header, including chrom tree. - $.when(read(bwg.url, 0, 512)).then(function(result) { - if (!result) { - return promise.resolve(null, "Couldn't fetch file"); - } - - var header = result; - var ba = new Uint8Array(header); - var sa = new Int16Array(header); - var la = new Int32Array(header); - var magic = ba[0] + (M1 * ba[1]) + (M2 * ba[2]) + (M3 * ba[3]); - if (magic == BIG_WIG_MAGIC) { - bwg.type = 'bigwig'; - } else if (magic == BIG_BED_MAGIC) { - bwg.type = 'bigbed'; - } else if (magic == BIG_WIG_MAGIC_BE || magic == BIG_BED_MAGIC_BE) { - return promise.resolve(null, "Currently don't support big-endian BBI files"); - - } else { - return promise.resolve(null, "Not a supported format, magic=0x" + magic.toString(16)); - - } - - bwg.version = sa[2]; // 4 - bwg.numZoomLevels = sa[3]; // 6 - bwg.chromTreeOffset = bwg_readOffset(ba, 8); - bwg.unzoomedDataOffset = bwg_readOffset(ba, 16); - bwg.unzoomedIndexOffset = bwg_readOffset(ba, 24); - bwg.fieldCount = sa[16]; // 32 - bwg.definedFieldCount = sa[17]; // 34 - bwg.asOffset = bwg_readOffset(ba, 36); - bwg.totalSummaryOffset = bwg_readOffset(ba, 44); - bwg.uncompressBufSize = la[13]; // 52 - bwg.extHeaderOffset = bwg_readOffset(ba, 56); - - bwg.zoomLevels = []; - for (var zl = 0; zl < bwg.numZoomLevels; ++zl) { - var zlReduction = la[zl*6 + 16] - var zlData = bwg_readOffset(ba, zl*24 + 72); - var zlIndex = bwg_readOffset(ba, zl*24 + 80); - bwg.zoomLevels.push({reduction: zlReduction, dataOffset: zlData, indexOffset: zlIndex}); - } - - $.when(bwg.readChromTree()).then(function() { - bwg.getAutoSQL(function(as) { - bwg.schema = as; - return promise.resolve(bwg); - }); - }); - }); - - return promise; - } - - - BigWig.prototype._tsFetch = function(zoom, chr, min, max, callback) { - var bwg = this; - if (zoom >= this.zoomLevels.length - 1) { - if (!this.topLevelReductionCache) { - this.getZoomedView(this.zoomLevels.length - 1).readWigDataById(-1, 0, 300000000, function(feats) { - bwg.topLevelReductionCache = feats; - return bwg._tsFetch(zoom, chr, min, max, callback); - }); - } else { - var f = []; - var c = this.topLevelReductionCache; - for (var fi = 0; fi < c.length; ++fi) { - if (c[fi]._chromId == chr) { - f.push(c[fi]); - } - } - return callback(f); - } - } else { - var view; - if (zoom < 0) { - view = this.getUnzoomedView(); - } else { - view = this.getZoomedView(zoom); - } - return view.readWigDataById(chr, min, max, callback); - } - } - - BigWig.prototype.thresholdSearch = function(chrName, referencePoint, dir, threshold, callback) { - dir = (dir<0) ? -1 : 1; - var bwg = this; - var initialChr = this.chromsToIDs[chrName]; - var candidates = [{chrOrd: 0, chr: initialChr, zoom: bwg.zoomLevels.length - 4, min: 0, max: 300000000, fromRef: true}] - for (var i = 1; i <= this.maxID + 1; ++i) { - var chrId = (initialChr + (dir*i)) % (this.maxID + 1); - if (chrId < 0) - chrId += (this.maxID + 1); - candidates.push({chrOrd: i, chr: chrId, zoom: bwg.zoomLevels.length - 1, min: 0, max: 300000000}) - } - - function fbThresholdSearchRecur() { - if (candidates.length == 0) { - return callback(null); - } - candidates.sort(function(c1, c2) { - var d = c1.zoom - c2.zoom; - if (d != 0) - return d; - - d = c1.chrOrd - c2.chrOrd; - if (d != 0) - return d; - else - return c1.min - c2.min * dir; - }); - - var candidate = candidates.splice(0, 1)[0]; - bwg._tsFetch(candidate.zoom, candidate.chr, candidate.min, candidate.max, function(feats) { - var rp = dir > 0 ? 0 : 300000000; - if (candidate.fromRef) - rp = referencePoint; - - for (var fi = 0; fi < feats.length; ++fi) { - var f = feats[fi]; - var score; - if (f.maxScore != undefined) - score = f.maxScore; - else - score = f.score; - - if (dir > 0) { - if (score > threshold) { - if (candidate.zoom < 0) { - if (f.min > rp) - return callback(f); - } else if (f.max > rp) { - candidates.push({chr: candidate.chr, chrOrd: candidate.chrOrd, zoom: candidate.zoom - 2, min: f.min, max: f.max, fromRef: candidate.fromRef}); - } - } - } else { - if (score > threshold) { - if (candidate.zoom < 0) { - if (f.max < rp) - return callback(f); - } else if (f.min < rp) { - candidates.push({chr: candidate.chr, chrOrd: candidate.chrOrd, zoom: candidate.zoom - 2, min: f.min, max: f.max, fromRef: candidate.fromRef}); - } - } - } - } - fbThresholdSearchRecur(); - }); - } - - fbThresholdSearchRecur(); - } - - BigWig.prototype.getAutoSQL = function(callback) { - var thisB = this; - if (!this.asOffset) - return callback(null); - - $.when(read(this.url, this.asOffset, 2048)).then(function(result) { - var ba = new Uint8Array(result); - var s = ''; - for (var i = 0; i < ba.length; ++i) { - if (ba[i] == 0) - break; - s += String.fromCharCode(ba[i]); - } - - /* - * Quick'n'dirty attempt to parse autoSql format. - * See: http://www.linuxjournal.com/files/linuxjournal.com/linuxjournal/articles/059/5949/5949l2.html - */ - - var header_re = /(\w+)\s+(\w+)\s+("([^"]+)")?\s+\(\s*/; - var field_re = /([\w\[\]]+)\s+(\w+)\s*;\s*("([^"]+)")?\s*/g; - - var headerMatch = header_re.exec(s); - if (headerMatch) { - var as = { - declType: headerMatch[1], - name: headerMatch[2], - comment: headerMatch[4], - - fields: [] - }; - - s = s.substring(headerMatch[0]); - for (var m = field_re.exec(s); m != null; m = field_re.exec(s)) { - as.fields.push({type: m[1], - name: m[2], - comment: m[4]}); - } - - return callback(as); - } - }); - }; - - BigWig.prototype.getExtraIndices = function(callback) { - var thisB = this; - if (this.version < 4 || this.extHeaderOffset == 0 || this.type != 'bigbed') { - return callback(null); - } else { - this.data.slice(this.extHeaderOffset, 64).fetch(function(result) { - if (!result) { - return callback(null, "Couldn't fetch extension header"); - } - - var ba = new Uint8Array(result); - var sa = new Int16Array(result); - var la = new Int32Array(result); - - var extHeaderSize = sa[0]; - var extraIndexCount = sa[1]; - var extraIndexListOffset = bwg_readOffset(ba, 4); - - if (extraIndexCount == 0) { - return callback(null); - } - - // FIXME 20byte records only make sense for single-field indices. - // Right now, these seem to be the only things around, but the format - // is actually more general. - thisB.data.slice(extraIndexListOffset, extraIndexCount * 20).fetch(function(eil) { - if (!eil) { - return callback(null, "Couldn't fetch index info"); - } - - var ba = new Uint8Array(eil); - var sa = new Int16Array(eil); - var la = new Int32Array(eil); - - var indices = []; - for (var ii = 0; ii < extraIndexCount; ++ii) { - var eiType = sa[ii*10]; - var eiFieldCount = sa[ii*10 + 1]; - var eiOffset = bwg_readOffset(ba, ii*20 + 4); - var eiField = sa[ii*10 + 8] - var index = new BBIExtraIndex(thisB, eiType, eiFieldCount, eiOffset, eiField); - indices.push(index); - } - callback(indices); - }); - }); - } - } - - function BBIExtraIndex(bbi, type, fieldCount, offset, field) { - this.bbi = bbi; - this.type = type; - this.fieldCount = fieldCount; - this.offset = offset; - this.field = field; - } - - BBIExtraIndex.prototype.lookup = function(name, callback) { - var thisB = this; - - this.bbi.data.slice(this.offset, 32).fetch(function(bpt) { - var ba = new Uint8Array(bpt); - var sa = new Int16Array(bpt); - var la = new Int32Array(bpt); - var bptMagic = la[0]; - var blockSize = la[1]; - var keySize = la[2]; - var valSize = la[3]; - var itemCount = bwg_readOffset(ba, 16); - var rootNodeOffset = 32; - - function bptReadNode(nodeOffset) { - thisB.bbi.data.slice(nodeOffset, 4 + (blockSize * (keySize + valSize))).fetch(function(node) { - var ba = new Uint8Array(node); - var sa = new Uint16Array(node); - var la = new Uint32Array(node); - - var nodeType = ba[0]; - var cnt = sa[1]; - - var offset = 4; - if (nodeType == 0) { - var lastChildOffset = null; - for (var n = 0; n < cnt; ++n) { - var key = ''; - for (var ki = 0; ki < keySize; ++ki) { - var charCode = ba[offset++]; - if (charCode != 0) { - key += String.fromCharCode(charCode); - } - } - - var childOffset = bwg_readOffset(ba, offset); - offset += 8; - - if (name.localeCompare(key) < 0 && lastChildOffset) { - bptReadNode(lastChildOffset); - return; - } - lastChildOffset = childOffset; - } - bptReadNode(lastChildOffset); - } else { - for (var n = 0; n < cnt; ++n) { - var key = ''; - for (var ki = 0; ki < keySize; ++ki) { - var charCode = ba[offset++]; - if (charCode != 0) { - key += String.fromCharCode(charCode); - } - } - - // Specific for EI case. - if (key == name) { - var start = bwg_readOffset(ba, offset); - var length = readInt(ba, offset + 8); - - return thisB.bbi.getUnzoomedView().fetchFeatures( - function(chr, min, max, toks) { - if (toks && toks.length > thisB.field - 3) - return toks[thisB.field - 3] == name; - }, - [{offset: start, size: length}], - callback); - } - offset += valSize; - } - return callback([]); - } - }); - } - - bptReadNode(thisB.offset + rootNodeOffset); - }); - } - - return { - makeBwg: makeBwg - }; -}); diff --git a/client/src/libs/bbi/jquery-ajax-native.js b/client/src/libs/bbi/jquery-ajax-native.js deleted file mode 100644 index 557027072f96..000000000000 --- a/client/src/libs/bbi/jquery-ajax-native.js +++ /dev/null @@ -1,157 +0,0 @@ -// jQuery Ajax Native Plugin - -// (c) 2015 Tarik Zakaria Benmerar, Acigna Inc. -// jQuery Ajax Native Plugin may be freely distributed under the MIT license. -(function (root, factory) { - if (typeof define === 'function' && define.amd) { - // AMD. Register as an anonymous module. - define(['jquery'], factory); - } else if (typeof exports === 'object') { - // Node. Does not work with strict CommonJS, but - // only CommonJS-like environments that support module.exports, - // like Node. - module.exports = factory(require('jquery')); - } else { - // Browser globals (root is window) - factory(root.jQuery); - } -}(this, function ( $ ) { - var ajaxSettings = $.ajaxSettings; - ajaxSettings.responseFields.native = 'responseNative'; - ajaxSettings.converters[ '* native' ] = true; - var support = {}, - xhrId = 0, - xhrSuccessStatus = { - // file protocol always yields status code 0, assume 200 - 0: 200, - // Support: IE9 - // #1450: sometimes IE returns 1223 when it should be 204 - 1223: 204 - }, - xhrCallbacks = {}, - xhrSupported = jQuery.ajaxSettings.xhr(); - // Support: IE9 - // Open requests must be manually aborted on unload (#5280) - if ( window.ActiveXObject ) { - $( window ).on( "unload", function() { - for ( var key in xhrCallbacks ) { - xhrCallbacks[ key ](); - } - }); - } - support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported ); - support.ajax = xhrSupported = !!xhrSupported; - - //Native Data Type Ajax Transport - $.ajaxTransport('native', function ( options ) { - var callback; - // Cross domain only allowed if supported through XMLHttpRequest - if ( support.cors || xhrSupported && !options.crossDomain ) { - return { - send: function( headers, complete ) { - var i, - xhr = options.xhr(), - id = ++xhrId, - responses = {}; - - xhr.open( options.type, options.url, options.async, options.username, options.password ); - - // Apply custom fields if provided - if ( options.xhrFields ) { - for ( i in options.xhrFields ) { - xhr[ i ] = options.xhrFields[ i ]; - } - } - - // Override mime type if needed - if ( options.mimeType && xhr.overrideMimeType ) { - xhr.overrideMimeType( options.mimeType ); - } - - // X-Requested-With header - // For cross-domain requests, seeing as conditions for a preflight are - // akin to a jigsaw puzzle, we simply never set it to be sure. - // (it can always be set on a per-request basis or even using ajaxSetup) - // For same-domain requests, won't change header if already provided. - if ( !options.crossDomain && !headers["X-Requested-With"] ) { - headers["X-Requested-With"] = "XMLHttpRequest"; - } - - // Set headers - for ( i in headers ) { - xhr.setRequestHeader( i, headers[ i ] ); - } - - // Callback - callback = function( type ) { - return function() { - if ( callback ) { - delete xhrCallbacks[ id ]; - callback = xhr.onload = xhr.onerror = null; - - if ( type === "abort" ) { - xhr.abort(); - } else if ( type === "error" ) { - complete( - // file: protocol always yields status 0; see #8605, #14207 - xhr.status, - xhr.statusText - ); - } else { - // The native response associated with the responseType - // Stored in the xhr.response attribute (XHR2 Spec) - if ( xhr.response ) { - responses.native = xhr.response; - } - - complete( - xhrSuccessStatus[ xhr.status ] || xhr.status, - xhr.statusText, - responses, - xhr.getAllResponseHeaders() - ); - } - } - }; - }; - - // Listen to events - xhr.onload = callback(); - xhr.onerror = callback("error"); - - // Create the abort callback - callback = xhrCallbacks[ id ] = callback("abort"); - - try { - // Do send the request (this may raise an exception) - xhr.send( options.hasContent && options.data || null ); - } catch ( e ) { - // #14683: Only rethrow if this hasn't been notified as an error yet - if ( callback ) { - throw e; - } - } - }, - - abort: function() { - if ( callback ) { - callback(); - } - } - }; - } - }); - - - //$.getNative wrapper - $.getNative = function ( url, callback ) { - return $.ajax({ - dataType: 'native', - url: url, - xhrFields: { - responseType: 'arraybuffer' - }, - success: callback - }); - } -})); diff --git a/client/src/libs/bbi/jszlib.js b/client/src/libs/bbi/jszlib.js deleted file mode 100644 index 1274c479e9b2..000000000000 --- a/client/src/libs/bbi/jszlib.js +++ /dev/null @@ -1,2163 +0,0 @@ -/* -*- mode: javascript; c-basic-offset: 4; indent-tabs-mode: nil -*- */ - -// -// Javascript ZLib -// By Thomas Down 2010-2011 -// -// Based very heavily on portions of jzlib (by ymnk@jcraft.com), who in -// turn credits Jean-loup Gailly and Mark Adler for the original zlib code. -// -// inflate.js: ZLib inflate code -// - -// -// Shared constants -// - -define([],function() { - -var MAX_WBITS=15; // 32K LZ77 window -var DEF_WBITS=MAX_WBITS; -var MAX_MEM_LEVEL=9; -var MANY=1440; -var BMAX = 15; - -// preset dictionary flag in zlib header -var PRESET_DICT=0x20; - -var Z_NO_FLUSH=0; -var Z_PARTIAL_FLUSH=1; -var Z_SYNC_FLUSH=2; -var Z_FULL_FLUSH=3; -var Z_FINISH=4; - -var Z_DEFLATED=8; - -var Z_OK=0; -var Z_STREAM_END=1; -var Z_NEED_DICT=2; -var Z_ERRNO=-1; -var Z_STREAM_ERROR=-2; -var Z_DATA_ERROR=-3; -var Z_MEM_ERROR=-4; -var Z_BUF_ERROR=-5; -var Z_VERSION_ERROR=-6; - -var METHOD=0; // waiting for method byte -var FLAG=1; // waiting for flag byte -var DICT4=2; // four dictionary check bytes to go -var DICT3=3; // three dictionary check bytes to go -var DICT2=4; // two dictionary check bytes to go -var DICT1=5; // one dictionary check byte to go -var DICT0=6; // waiting for inflateSetDictionary -var BLOCKS=7; // decompressing blocks -var CHECK4=8; // four check bytes to go -var CHECK3=9; // three check bytes to go -var CHECK2=10; // two check bytes to go -var CHECK1=11; // one check byte to go -var DONE=12; // finished check, done -var BAD=13; // got an error--stay here - -var inflate_mask = [0x00000000, 0x00000001, 0x00000003, 0x00000007, 0x0000000f, 0x0000001f, 0x0000003f, 0x0000007f, 0x000000ff, 0x000001ff, 0x000003ff, 0x000007ff, 0x00000fff, 0x00001fff, 0x00003fff, 0x00007fff, 0x0000ffff]; - -var IB_TYPE=0; // get type bits (3, including end bit) -var IB_LENS=1; // get lengths for stored -var IB_STORED=2;// processing stored block -var IB_TABLE=3; // get table lengths -var IB_BTREE=4; // get bit lengths tree for a dynamic block -var IB_DTREE=5; // get length, distance trees for a dynamic block -var IB_CODES=6; // processing fixed or dynamic block -var IB_DRY=7; // output remaining window bytes -var IB_DONE=8; // finished last block, done -var IB_BAD=9; // ot a data error--stuck here - -var fixed_bl = 9; -var fixed_bd = 5; - -var fixed_tl = [ - 96,7,256, 0,8,80, 0,8,16, 84,8,115, - 82,7,31, 0,8,112, 0,8,48, 0,9,192, - 80,7,10, 0,8,96, 0,8,32, 0,9,160, - 0,8,0, 0,8,128, 0,8,64, 0,9,224, - 80,7,6, 0,8,88, 0,8,24, 0,9,144, - 83,7,59, 0,8,120, 0,8,56, 0,9,208, - 81,7,17, 0,8,104, 0,8,40, 0,9,176, - 0,8,8, 0,8,136, 0,8,72, 0,9,240, - 80,7,4, 0,8,84, 0,8,20, 85,8,227, - 83,7,43, 0,8,116, 0,8,52, 0,9,200, - 81,7,13, 0,8,100, 0,8,36, 0,9,168, - 0,8,4, 0,8,132, 0,8,68, 0,9,232, - 80,7,8, 0,8,92, 0,8,28, 0,9,152, - 84,7,83, 0,8,124, 0,8,60, 0,9,216, - 82,7,23, 0,8,108, 0,8,44, 0,9,184, - 0,8,12, 0,8,140, 0,8,76, 0,9,248, - 80,7,3, 0,8,82, 0,8,18, 85,8,163, - 83,7,35, 0,8,114, 0,8,50, 0,9,196, - 81,7,11, 0,8,98, 0,8,34, 0,9,164, - 0,8,2, 0,8,130, 0,8,66, 0,9,228, - 80,7,7, 0,8,90, 0,8,26, 0,9,148, - 84,7,67, 0,8,122, 0,8,58, 0,9,212, - 82,7,19, 0,8,106, 0,8,42, 0,9,180, - 0,8,10, 0,8,138, 0,8,74, 0,9,244, - 80,7,5, 0,8,86, 0,8,22, 192,8,0, - 83,7,51, 0,8,118, 0,8,54, 0,9,204, - 81,7,15, 0,8,102, 0,8,38, 0,9,172, - 0,8,6, 0,8,134, 0,8,70, 0,9,236, - 80,7,9, 0,8,94, 0,8,30, 0,9,156, - 84,7,99, 0,8,126, 0,8,62, 0,9,220, - 82,7,27, 0,8,110, 0,8,46, 0,9,188, - 0,8,14, 0,8,142, 0,8,78, 0,9,252, - 96,7,256, 0,8,81, 0,8,17, 85,8,131, - 82,7,31, 0,8,113, 0,8,49, 0,9,194, - 80,7,10, 0,8,97, 0,8,33, 0,9,162, - 0,8,1, 0,8,129, 0,8,65, 0,9,226, - 80,7,6, 0,8,89, 0,8,25, 0,9,146, - 83,7,59, 0,8,121, 0,8,57, 0,9,210, - 81,7,17, 0,8,105, 0,8,41, 0,9,178, - 0,8,9, 0,8,137, 0,8,73, 0,9,242, - 80,7,4, 0,8,85, 0,8,21, 80,8,258, - 83,7,43, 0,8,117, 0,8,53, 0,9,202, - 81,7,13, 0,8,101, 0,8,37, 0,9,170, - 0,8,5, 0,8,133, 0,8,69, 0,9,234, - 80,7,8, 0,8,93, 0,8,29, 0,9,154, - 84,7,83, 0,8,125, 0,8,61, 0,9,218, - 82,7,23, 0,8,109, 0,8,45, 0,9,186, - 0,8,13, 0,8,141, 0,8,77, 0,9,250, - 80,7,3, 0,8,83, 0,8,19, 85,8,195, - 83,7,35, 0,8,115, 0,8,51, 0,9,198, - 81,7,11, 0,8,99, 0,8,35, 0,9,166, - 0,8,3, 0,8,131, 0,8,67, 0,9,230, - 80,7,7, 0,8,91, 0,8,27, 0,9,150, - 84,7,67, 0,8,123, 0,8,59, 0,9,214, - 82,7,19, 0,8,107, 0,8,43, 0,9,182, - 0,8,11, 0,8,139, 0,8,75, 0,9,246, - 80,7,5, 0,8,87, 0,8,23, 192,8,0, - 83,7,51, 0,8,119, 0,8,55, 0,9,206, - 81,7,15, 0,8,103, 0,8,39, 0,9,174, - 0,8,7, 0,8,135, 0,8,71, 0,9,238, - 80,7,9, 0,8,95, 0,8,31, 0,9,158, - 84,7,99, 0,8,127, 0,8,63, 0,9,222, - 82,7,27, 0,8,111, 0,8,47, 0,9,190, - 0,8,15, 0,8,143, 0,8,79, 0,9,254, - 96,7,256, 0,8,80, 0,8,16, 84,8,115, - 82,7,31, 0,8,112, 0,8,48, 0,9,193, - - 80,7,10, 0,8,96, 0,8,32, 0,9,161, - 0,8,0, 0,8,128, 0,8,64, 0,9,225, - 80,7,6, 0,8,88, 0,8,24, 0,9,145, - 83,7,59, 0,8,120, 0,8,56, 0,9,209, - 81,7,17, 0,8,104, 0,8,40, 0,9,177, - 0,8,8, 0,8,136, 0,8,72, 0,9,241, - 80,7,4, 0,8,84, 0,8,20, 85,8,227, - 83,7,43, 0,8,116, 0,8,52, 0,9,201, - 81,7,13, 0,8,100, 0,8,36, 0,9,169, - 0,8,4, 0,8,132, 0,8,68, 0,9,233, - 80,7,8, 0,8,92, 0,8,28, 0,9,153, - 84,7,83, 0,8,124, 0,8,60, 0,9,217, - 82,7,23, 0,8,108, 0,8,44, 0,9,185, - 0,8,12, 0,8,140, 0,8,76, 0,9,249, - 80,7,3, 0,8,82, 0,8,18, 85,8,163, - 83,7,35, 0,8,114, 0,8,50, 0,9,197, - 81,7,11, 0,8,98, 0,8,34, 0,9,165, - 0,8,2, 0,8,130, 0,8,66, 0,9,229, - 80,7,7, 0,8,90, 0,8,26, 0,9,149, - 84,7,67, 0,8,122, 0,8,58, 0,9,213, - 82,7,19, 0,8,106, 0,8,42, 0,9,181, - 0,8,10, 0,8,138, 0,8,74, 0,9,245, - 80,7,5, 0,8,86, 0,8,22, 192,8,0, - 83,7,51, 0,8,118, 0,8,54, 0,9,205, - 81,7,15, 0,8,102, 0,8,38, 0,9,173, - 0,8,6, 0,8,134, 0,8,70, 0,9,237, - 80,7,9, 0,8,94, 0,8,30, 0,9,157, - 84,7,99, 0,8,126, 0,8,62, 0,9,221, - 82,7,27, 0,8,110, 0,8,46, 0,9,189, - 0,8,14, 0,8,142, 0,8,78, 0,9,253, - 96,7,256, 0,8,81, 0,8,17, 85,8,131, - 82,7,31, 0,8,113, 0,8,49, 0,9,195, - 80,7,10, 0,8,97, 0,8,33, 0,9,163, - 0,8,1, 0,8,129, 0,8,65, 0,9,227, - 80,7,6, 0,8,89, 0,8,25, 0,9,147, - 83,7,59, 0,8,121, 0,8,57, 0,9,211, - 81,7,17, 0,8,105, 0,8,41, 0,9,179, - 0,8,9, 0,8,137, 0,8,73, 0,9,243, - 80,7,4, 0,8,85, 0,8,21, 80,8,258, - 83,7,43, 0,8,117, 0,8,53, 0,9,203, - 81,7,13, 0,8,101, 0,8,37, 0,9,171, - 0,8,5, 0,8,133, 0,8,69, 0,9,235, - 80,7,8, 0,8,93, 0,8,29, 0,9,155, - 84,7,83, 0,8,125, 0,8,61, 0,9,219, - 82,7,23, 0,8,109, 0,8,45, 0,9,187, - 0,8,13, 0,8,141, 0,8,77, 0,9,251, - 80,7,3, 0,8,83, 0,8,19, 85,8,195, - 83,7,35, 0,8,115, 0,8,51, 0,9,199, - 81,7,11, 0,8,99, 0,8,35, 0,9,167, - 0,8,3, 0,8,131, 0,8,67, 0,9,231, - 80,7,7, 0,8,91, 0,8,27, 0,9,151, - 84,7,67, 0,8,123, 0,8,59, 0,9,215, - 82,7,19, 0,8,107, 0,8,43, 0,9,183, - 0,8,11, 0,8,139, 0,8,75, 0,9,247, - 80,7,5, 0,8,87, 0,8,23, 192,8,0, - 83,7,51, 0,8,119, 0,8,55, 0,9,207, - 81,7,15, 0,8,103, 0,8,39, 0,9,175, - 0,8,7, 0,8,135, 0,8,71, 0,9,239, - 80,7,9, 0,8,95, 0,8,31, 0,9,159, - 84,7,99, 0,8,127, 0,8,63, 0,9,223, - 82,7,27, 0,8,111, 0,8,47, 0,9,191, - 0,8,15, 0,8,143, 0,8,79, 0,9,255 -]; -var fixed_td = [ - 80,5,1, 87,5,257, 83,5,17, 91,5,4097, - 81,5,5, 89,5,1025, 85,5,65, 93,5,16385, - 80,5,3, 88,5,513, 84,5,33, 92,5,8193, - 82,5,9, 90,5,2049, 86,5,129, 192,5,24577, - 80,5,2, 87,5,385, 83,5,25, 91,5,6145, - 81,5,7, 89,5,1537, 85,5,97, 93,5,24577, - 80,5,4, 88,5,769, 84,5,49, 92,5,12289, - 82,5,13, 90,5,3073, 86,5,193, 192,5,24577 -]; - - // Tables for deflate from PKZIP's appnote.txt. - var cplens = [ // Copy lengths for literal codes 257..285 - 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 17, 19, 23, 27, 31, - 35, 43, 51, 59, 67, 83, 99, 115, 131, 163, 195, 227, 258, 0, 0 - ]; - - // see note #13 above about 258 - var cplext = [ // Extra bits for literal codes 257..285 - 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 2, 2, 2, 2, - 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 0, 112, 112 // 112==invalid - ]; - - var cpdist = [ // Copy offsets for distance codes 0..29 - 1, 2, 3, 4, 5, 7, 9, 13, 17, 25, 33, 49, 65, 97, 129, 193, - 257, 385, 513, 769, 1025, 1537, 2049, 3073, 4097, 6145, - 8193, 12289, 16385, 24577 - ]; - - var cpdext = [ // Extra bits for distance codes - 0, 0, 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 5, 5, 6, 6, - 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, - 12, 12, 13, 13]; - -// -// ZStream.java -// - -function ZStream() { -} - - -ZStream.prototype.inflateInit = function(w, nowrap) { - if (!w) { - w = DEF_WBITS; - } - if (nowrap) { - nowrap = false; - } - this.istate = new Inflate(); - return this.istate.inflateInit(this, nowrap?-w:w); -} - -ZStream.prototype.inflate = function(f) { - if(this.istate==null) return Z_STREAM_ERROR; - return this.istate.inflate(this, f); -} - -ZStream.prototype.inflateEnd = function(){ - if(this.istate==null) return Z_STREAM_ERROR; - var ret=istate.inflateEnd(this); - this.istate = null; - return ret; -} -ZStream.prototype.inflateSync = function(){ - // if(istate == null) return Z_STREAM_ERROR; - return istate.inflateSync(this); -} -ZStream.prototype.inflateSetDictionary = function(dictionary, dictLength){ - // if(istate == null) return Z_STREAM_ERROR; - return istate.inflateSetDictionary(this, dictionary, dictLength); -} - -/* - - public int deflateInit(int level){ - return deflateInit(level, MAX_WBITS); - } - public int deflateInit(int level, boolean nowrap){ - return deflateInit(level, MAX_WBITS, nowrap); - } - public int deflateInit(int level, int bits){ - return deflateInit(level, bits, false); - } - public int deflateInit(int level, int bits, boolean nowrap){ - dstate=new Deflate(); - return dstate.deflateInit(this, level, nowrap?-bits:bits); - } - public int deflate(int flush){ - if(dstate==null){ - return Z_STREAM_ERROR; - } - return dstate.deflate(this, flush); - } - public int deflateEnd(){ - if(dstate==null) return Z_STREAM_ERROR; - int ret=dstate.deflateEnd(); - dstate=null; - return ret; - } - public int deflateParams(int level, int strategy){ - if(dstate==null) return Z_STREAM_ERROR; - return dstate.deflateParams(this, level, strategy); - } - public int deflateSetDictionary (byte[] dictionary, int dictLength){ - if(dstate == null) - return Z_STREAM_ERROR; - return dstate.deflateSetDictionary(this, dictionary, dictLength); - } - -*/ - -/* - // Flush as much pending output as possible. All deflate() output goes - // through this function so some applications may wish to modify it - // to avoid allocating a large strm->next_out buffer and copying into it. - // (See also read_buf()). - void flush_pending(){ - int len=dstate.pending; - - if(len>avail_out) len=avail_out; - if(len==0) return; - - if(dstate.pending_buf.length<=dstate.pending_out || - next_out.length<=next_out_index || - dstate.pending_buf.length<(dstate.pending_out+len) || - next_out.length<(next_out_index+len)){ - System.out.println(dstate.pending_buf.length+", "+dstate.pending_out+ - ", "+next_out.length+", "+next_out_index+", "+len); - System.out.println("avail_out="+avail_out); - } - - System.arraycopy(dstate.pending_buf, dstate.pending_out, - next_out, next_out_index, len); - - next_out_index+=len; - dstate.pending_out+=len; - total_out+=len; - avail_out-=len; - dstate.pending-=len; - if(dstate.pending==0){ - dstate.pending_out=0; - } - } - - // Read a new buffer from the current input stream, update the adler32 - // and total number of bytes read. All deflate() input goes through - // this function so some applications may wish to modify it to avoid - // allocating a large strm->next_in buffer and copying from it. - // (See also flush_pending()). - int read_buf(byte[] buf, int start, int size) { - int len=avail_in; - - if(len>size) len=size; - if(len==0) return 0; - - avail_in-=len; - - if(dstate.noheader==0) { - adler=_adler.adler32(adler, next_in, next_in_index, len); - } - System.arraycopy(next_in, next_in_index, buf, start, len); - next_in_index += len; - total_in += len; - return len; - } - - public void free(){ - next_in=null; - next_out=null; - msg=null; - _adler=null; - } -} -*/ - - -// -// Inflate.java -// - -function Inflate() { - this.was = [0]; -} - -Inflate.prototype.inflateReset = function(z) { - if(z == null || z.istate == null) return Z_STREAM_ERROR; - - z.total_in = z.total_out = 0; - z.msg = null; - z.istate.mode = z.istate.nowrap!=0 ? BLOCKS : METHOD; - z.istate.blocks.reset(z, null); - return Z_OK; -} - -Inflate.prototype.inflateEnd = function(z){ - if(this.blocks != null) - this.blocks.free(z); - this.blocks=null; - return Z_OK; -} - -Inflate.prototype.inflateInit = function(z, w){ - z.msg = null; - this.blocks = null; - - // handle undocumented nowrap option (no zlib header or check) - nowrap = 0; - if(w < 0){ - w = - w; - nowrap = 1; - } - - // set window size - if(w<8 ||w>15){ - this.inflateEnd(z); - return Z_STREAM_ERROR; - } - this.wbits=w; - - z.istate.blocks=new InfBlocks(z, - z.istate.nowrap!=0 ? null : this, - 1<>4)+8>z.istate.wbits){ - z.istate.mode = BAD; - z.msg="invalid window size"; - z.istate.marker = 5; // can't try inflateSync - break; - } - z.istate.mode=FLAG; - case FLAG: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - b = (z.next_in[z.next_in_index++])&0xff; - - if((((z.istate.method << 8)+b) % 31)!=0){ - z.istate.mode = BAD; - z.msg = "incorrect header check"; - z.istate.marker = 5; // can't try inflateSync - break; - } - - if((b&PRESET_DICT)==0){ - z.istate.mode = BLOCKS; - break; - } - z.istate.mode = DICT4; - case DICT4: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need=((z.next_in[z.next_in_index++]&0xff)<<24)&0xff000000; - z.istate.mode=DICT3; - case DICT3: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need+=((z.next_in[z.next_in_index++]&0xff)<<16)&0xff0000; - z.istate.mode=DICT2; - case DICT2: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need+=((z.next_in[z.next_in_index++]&0xff)<<8)&0xff00; - z.istate.mode=DICT1; - case DICT1: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need += (z.next_in[z.next_in_index++]&0xff); - z.adler = z.istate.need; - z.istate.mode = DICT0; - return Z_NEED_DICT; - case DICT0: - z.istate.mode = BAD; - z.msg = "need dictionary"; - z.istate.marker = 0; // can try inflateSync - return Z_STREAM_ERROR; - case BLOCKS: - - r = z.istate.blocks.proc(z, r); - if(r == Z_DATA_ERROR){ - z.istate.mode = BAD; - z.istate.marker = 0; // can try inflateSync - break; - } - if(r == Z_OK){ - r = f; - } - if(r != Z_STREAM_END){ - return r; - } - r = f; - z.istate.blocks.reset(z, z.istate.was); - if(z.istate.nowrap!=0){ - z.istate.mode=DONE; - break; - } - z.istate.mode=CHECK4; - case CHECK4: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need=((z.next_in[z.next_in_index++]&0xff)<<24)&0xff000000; - z.istate.mode=CHECK3; - case CHECK3: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need+=((z.next_in[z.next_in_index++]&0xff)<<16)&0xff0000; - z.istate.mode = CHECK2; - case CHECK2: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need+=((z.next_in[z.next_in_index++]&0xff)<<8)&0xff00; - z.istate.mode = CHECK1; - case CHECK1: - - if(z.avail_in==0)return r;r=f; - - z.avail_in--; z.total_in++; - z.istate.need+=(z.next_in[z.next_in_index++]&0xff); - - if(((z.istate.was[0])) != ((z.istate.need))){ - z.istate.mode = BAD; - z.msg = "incorrect data check"; - z.istate.marker = 5; // can't try inflateSync - break; - } - - z.istate.mode = DONE; - case DONE: - return Z_STREAM_END; - case BAD: - return Z_DATA_ERROR; - default: - return Z_STREAM_ERROR; - } - } - } - - -Inflate.prototype.inflateSetDictionary = function(z, dictionary, dictLength) { - var index=0; - var length = dictLength; - if(z==null || z.istate == null|| z.istate.mode != DICT0) - return Z_STREAM_ERROR; - - if(z._adler.adler32(1, dictionary, 0, dictLength)!=z.adler){ - return Z_DATA_ERROR; - } - - z.adler = z._adler.adler32(0, null, 0, 0); - - if(length >= (1<>> 1){ - case 0: // stored - {b>>>=(3);k-=(3);} - t = k & 7; // go to byte boundary - - {b>>>=(t);k-=(t);} - this.mode = IB_LENS; // get length of stored block - break; - case 1: // fixed - { - var bl=new Int32Array(1); - var bd=new Int32Array(1); - var tl=[]; - var td=[]; - - inflate_trees_fixed(bl, bd, tl, td, z); - this.codes.init(bl[0], bd[0], tl[0], 0, td[0], 0, z); - } - - {b>>>=(3);k-=(3);} - - this.mode = IB_CODES; - break; - case 2: // dynamic - - {b>>>=(3);k-=(3);} - - this.mode = IB_TABLE; - break; - case 3: // illegal - - {b>>>=(3);k-=(3);} - this.mode = BAD; - z.msg = "invalid block type"; - r = Z_DATA_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - } - break; - case IB_LENS: - while(k<(32)){ - if(n!=0){ - r=Z_OK; - } - else{ - this.bitb=b; this.bitk=k; - z.avail_in=n; - z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - }; - n--; - b|=(z.next_in[p++]&0xff)<>> 16) & 0xffff) != (b & 0xffff)){ - this.mode = BAD; - z.msg = "invalid stored block lengths"; - r = Z_DATA_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - } - this.left = (b & 0xffff); - b = k = 0; // dump bits - this.mode = this.left!=0 ? IB_STORED : (this.last!=0 ? IB_DRY : IB_TYPE); - break; - case IB_STORED: - if (n == 0){ - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - write=q; - return this.inflate_flush(z,r); - } - - if(m==0){ - if(q==end&&read!=0){ - q=0; m=(qn) t = n; - if(t>m) t = m; - arrayCopy(z.next_in, p, this.window, q, t); - p += t; n -= t; - q += t; m -= t; - if ((this.left -= t) != 0) - break; - this.mode = (this.last != 0 ? IB_DRY : IB_TYPE); - break; - case IB_TABLE: - - while(k<(14)){ - if(n!=0){ - r=Z_OK; - } - else{ - this.bitb=b; this.bitk=k; - z.avail_in=n; - z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - }; - n--; - b|=(z.next_in[p++]&0xff)< 29 || ((t >> 5) & 0x1f) > 29) - { - this.mode = IB_BAD; - z.msg = "too many length or distance symbols"; - r = Z_DATA_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - } - t = 258 + (t & 0x1f) + ((t >> 5) & 0x1f); - if(this.blens==null || this.blens.length>>=(14);k-=(14);} - - this.index = 0; - mode = IB_BTREE; - case IB_BTREE: - while (this.index < 4 + (this.table >>> 10)){ - while(k<(3)){ - if(n!=0){ - r=Z_OK; - } - else{ - this.bitb=b; this.bitk=k; - z.avail_in=n; - z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - }; - n--; - b|=(z.next_in[p++]&0xff)<>>=(3);k-=(3);} - } - - while(this.index < 19){ - this.blens[INFBLOCKS_BORDER[this.index++]] = 0; - } - - this.bb[0] = 7; - t = this.inftree.inflate_trees_bits(this.blens, this.bb, this.tb, this.hufts, z); - if (t != Z_OK){ - r = t; - if (r == Z_DATA_ERROR){ - this.blens=null; - this.mode = IB_BAD; - } - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - write=q; - return this.inflate_flush(z,r); - } - - this.index = 0; - this.mode = IB_DTREE; - case IB_DTREE: - while (true){ - t = this.table; - if(!(this.index < 258 + (t & 0x1f) + ((t >> 5) & 0x1f))){ - break; - } - - var h; //int[] - var i, j, c; - - t = this.bb[0]; - - while(k<(t)){ - if(n!=0){ - r=Z_OK; - } - else{ - this.bitb=b; this.bitk=k; - z.avail_in=n; - z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - }; - n--; - b|=(z.next_in[p++]&0xff)<>>=(t);k-=(t); - this.blens[this.index++] = c; - } - else { // c == 16..18 - i = c == 18 ? 7 : c - 14; - j = c == 18 ? 11 : 3; - - while(k<(t+i)){ - if(n!=0){ - r=Z_OK; - } - else{ - this.bitb=b; this.bitk=k; - z.avail_in=n; - z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - }; - n--; - b|=(z.next_in[p++]&0xff)<>>=(t);k-=(t); - - j += (b & inflate_mask[i]); - - b>>>=(i);k-=(i); - - i = this.index; - t = this.table; - if (i + j > 258 + (t & 0x1f) + ((t >> 5) & 0x1f) || - (c == 16 && i < 1)){ - this.blens=null; - this.mode = IB_BAD; - z.msg = "invalid bit length repeat"; - r = Z_DATA_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - } - - c = c == 16 ? this.blens[i-1] : 0; - do{ - this.blens[i++] = c; - } - while (--j!=0); - this.index = i; - } - } - - this.tb[0]=-1; - { - var bl=new Int32Array(1); - var bd=new Int32Array(1); - var tl=new Int32Array(1); - var td=new Int32Array(1); - bl[0] = 9; // must be <= 9 for lookahead assumptions - bd[0] = 6; // must be <= 9 for lookahead assumptions - - t = this.table; - t = this.inftree.inflate_trees_dynamic(257 + (t & 0x1f), - 1 + ((t >> 5) & 0x1f), - this.blens, bl, bd, tl, td, this.hufts, z); - - if (t != Z_OK){ - if (t == Z_DATA_ERROR){ - this.blens=null; - this.mode = BAD; - } - r = t; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z,r); - } - this.codes.init(bl[0], bd[0], this.hufts, tl[0], this.hufts, td[0], z); - } - this.mode = IB_CODES; - case IB_CODES: - this.bitb=b; this.bitk=k; - z.avail_in=n; z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - - if ((r = this.codes.proc(this, z, r)) != Z_STREAM_END){ - return this.inflate_flush(z, r); - } - r = Z_OK; - this.codes.free(z); - - p=z.next_in_index; n=z.avail_in;b=this.bitb;k=this.bitk; - q=this.write;m = (q < this.read ? this.read-q-1 : this.end-q); - - if (this.last==0){ - this.mode = IB_TYPE; - break; - } - this.mode = IB_DRY; - case IB_DRY: - this.write=q; - r = this.inflate_flush(z, r); - q=this.write; m = (q < this.read ? this.read-q-1 : this.end-q); - if (this.read != this.write){ - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z, r); - } - mode = DONE; - case IB_DONE: - r = Z_STREAM_END; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z, r); - case IB_BAD: - r = Z_DATA_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z, r); - - default: - r = Z_STREAM_ERROR; - - this.bitb=b; this.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - this.write=q; - return this.inflate_flush(z, r); - } - } - } - -InfBlocks.prototype.free = function(z){ - this.reset(z, null); - this.window=null; - this.hufts=null; -} - -InfBlocks.prototype.set_dictionary = function(d, start, n){ - arrayCopy(d, start, window, 0, n); - this.read = this.write = n; -} - - // Returns true if inflate is currently at the end of a block generated - // by Z_SYNC_FLUSH or Z_FULL_FLUSH. -InfBlocks.prototype.sync_point = function(){ - return this.mode == IB_LENS; -} - - // copy as much as possible from the sliding window to the output area -InfBlocks.prototype.inflate_flush = function(z, r){ - var n; - var p; - var q; - - // local copies of source and destination pointers - p = z.next_out_index; - q = this.read; - - // compute number of bytes to copy as far as end of window - n = ((q <= this.write ? this.write : this.end) - q); - if (n > z.avail_out) n = z.avail_out; - if (n!=0 && r == Z_BUF_ERROR) r = Z_OK; - - // update counters - z.avail_out -= n; - z.total_out += n; - - // update check information - if(this.checkfn != null) - z.adler=this.check=z._adler.adler32(this.check, this.window, q, n); - - // copy as far as end of window - arrayCopy(this.window, q, z.next_out, p, n); - p += n; - q += n; - - // see if more to copy at beginning of window - if (q == this.end){ - // wrap pointers - q = 0; - if (this.write == this.end) - this.write = 0; - - // compute bytes to copy - n = this.write - q; - if (n > z.avail_out) n = z.avail_out; - if (n!=0 && r == Z_BUF_ERROR) r = Z_OK; - - // update counters - z.avail_out -= n; - z.total_out += n; - - // update check information - if(this.checkfn != null) - z.adler=this.check=z._adler.adler32(this.check, this.window, q, n); - - // copy - arrayCopy(this.window, q, z.next_out, p, n); - p += n; - q += n; - } - - // update pointers - z.next_out_index = p; - this.read = q; - - // done - return r; - } - -// -// InfCodes.java -// - -var IC_START=0; // x: set up for LEN -var IC_LEN=1; // i: get length/literal/eob next -var IC_LENEXT=2; // i: getting length extra (have base) -var IC_DIST=3; // i: get distance next -var IC_DISTEXT=4;// i: getting distance extra -var IC_COPY=5; // o: copying bytes in window, waiting for space -var IC_LIT=6; // o: got literal, waiting for output space -var IC_WASH=7; // o: got eob, possibly still output waiting -var IC_END=8; // x: got eob and all data flushed -var IC_BADCODE=9;// x: got error - -function InfCodes() { -} - -InfCodes.prototype.init = function(bl, bd, tl, tl_index, td, td_index, z) { - this.mode=IC_START; - this.lbits=bl; - this.dbits=bd; - this.ltree=tl; - this.ltree_index=tl_index; - this.dtree = td; - this.dtree_index=td_index; - this.tree=null; -} - -InfCodes.prototype.proc = function(s, z, r){ - var j; // temporary storage - var t; // temporary pointer (int[]) - var tindex; // temporary pointer - var e; // extra bits or operation - var b=0; // bit buffer - var k=0; // bits in bit buffer - var p=0; // input data pointer - var n; // bytes available there - var q; // output window write pointer - var m; // bytes to end of window or read pointer - var f; // pointer to copy strings from - - // copy input/output information to locals (UPDATE macro restores) - p=z.next_in_index;n=z.avail_in;b=s.bitb;k=s.bitk; - q=s.write;m=q= 258 && n >= 10){ - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - r = this.inflate_fast(this.lbits, this.dbits, - this.ltree, this.ltree_index, - this.dtree, this.dtree_index, - s, z); - - p=z.next_in_index;n=z.avail_in;b=s.bitb;k=s.bitk; - q=s.write;m=q>>=(this.tree[tindex+1]); - k-=(this.tree[tindex+1]); - - e=this.tree[tindex]; - - if(e == 0){ // literal - this.lit = this.tree[tindex+2]; - this.mode = IC_LIT; - break; - } - if((e & 16)!=0 ){ // length - this.get = e & 15; - this.len = this.tree[tindex+2]; - this.mode = IC_LENEXT; - break; - } - if ((e & 64) == 0){ // next table - this.need = e; - this.tree_index = tindex/3 + this.tree[tindex+2]; - break; - } - if ((e & 32)!=0){ // end of block - this.mode = IC_WASH; - break; - } - this.mode = IC_BADCODE; // invalid code - z.msg = "invalid literal/length code"; - r = Z_DATA_ERROR; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - return s.inflate_flush(z,r); - - case IC_LENEXT: // i: getting length extra (have base) - j = this.get; - - while(k<(j)){ - if(n!=0)r=Z_OK; - else{ - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - return s.inflate_flush(z,r); - } - n--; b|=(z.next_in[p++]&0xff)<>=j; - k-=j; - - this.need = this.dbits; - this.tree = this.dtree; - this.tree_index = this.dtree_index; - this.mode = IC_DIST; - case IC_DIST: // i: get distance next - j = this.need; - - while(k<(j)){ - if(n!=0)r=Z_OK; - else{ - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - return s.inflate_flush(z,r); - } - n--; b|=(z.next_in[p++]&0xff)<>=this.tree[tindex+1]; - k-=this.tree[tindex+1]; - - e = (this.tree[tindex]); - if((e & 16)!=0){ // distance - this.get = e & 15; - this.dist = this.tree[tindex+2]; - this.mode = IC_DISTEXT; - break; - } - if ((e & 64) == 0){ // next table - this.need = e; - this.tree_index = tindex/3 + this.tree[tindex+2]; - break; - } - this.mode = IC_BADCODE; // invalid code - z.msg = "invalid distance code"; - r = Z_DATA_ERROR; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - return s.inflate_flush(z,r); - - case IC_DISTEXT: // i: getting distance extra - j = this.get; - - while(k<(j)){ - if(n!=0)r=Z_OK; - else{ - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - return s.inflate_flush(z,r); - } - n--; b|=(z.next_in[p++]&0xff)<>=j; - k-=j; - - this.mode = IC_COPY; - case IC_COPY: // o: copying bytes in window, waiting for space - f = q - this.dist; - while(f < 0){ // modulo window size-"while" instead - f += s.end; // of "if" handles invalid distances - } - while (this.len!=0){ - - if(m==0){ - if(q==s.end&&s.read!=0){q=0;m=q 7){ // return unused byte, if any - k -= 8; - n++; - p--; // can always return one - } - - s.write=q; r=s.inflate_flush(z,r); - q=s.write;m=q= 258 && n >= 10 - // get literal/length code - while(k<(20)){ // max bits for literal/length code - n--; - b|=(z.next_in[p++]&0xff)<>=(tp[tp_index_t_3+1]); k-=(tp[tp_index_t_3+1]); - - s.window[q++] = tp[tp_index_t_3+2]; - m--; - continue; - } - do { - - b>>=(tp[tp_index_t_3+1]); k-=(tp[tp_index_t_3+1]); - - if((e&16)!=0){ - e &= 15; - c = tp[tp_index_t_3+2] + (b & inflate_mask[e]); - - b>>=e; k-=e; - - // decode distance base of block to copy - while(k<(15)){ // max bits for distance code - n--; - b|=(z.next_in[p++]&0xff)<>=(tp[tp_index_t_3+1]); k-=(tp[tp_index_t_3+1]); - - if((e&16)!=0){ - // get extra bits to add to distance base - e &= 15; - while(k<(e)){ // get extra bits (up to 13) - n--; - b|=(z.next_in[p++]&0xff)<>=(e); k-=(e); - - // do the copy - m -= c; - if (q >= d){ // offset before dest - // just copy - r=q-d; - if(q-r>0 && 2>(q-r)){ - s.window[q++]=s.window[r++]; // minimum count is three, - s.window[q++]=s.window[r++]; // so unroll loop a little - c-=2; - } - else{ - s.window[q++]=s.window[r++]; // minimum count is three, - s.window[q++]=s.window[r++]; // so unroll loop a little - c-=2; - } - } - else{ // else offset after destination - r=q-d; - do{ - r+=s.end; // force pointer in window - }while(r<0); // covers invalid distances - e=s.end-r; - if(c>e){ // if source crosses, - c-=e; // wrapped copy - if(q-r>0 && e>(q-r)){ - do{s.window[q++] = s.window[r++];} - while(--e!=0); - } - else{ - arrayCopy(s.window, r, s.window, q, e); - q+=e; r+=e; e=0; - } - r = 0; // copy rest from start of window - } - - } - - // copy all or what's left - do{s.window[q++] = s.window[r++];} - while(--c!=0); - break; - } - else if((e&64)==0){ - t+=tp[tp_index_t_3+2]; - t+=(b&inflate_mask[e]); - tp_index_t_3=(tp_index+t)*3; - e=tp[tp_index_t_3]; - } - else{ - z.msg = "invalid distance code"; - - c=z.avail_in-n;c=(k>>3)>3:c;n+=c;p-=c;k-=c<<3; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - - return Z_DATA_ERROR; - } - } - while(true); - break; - } - - if((e&64)==0){ - t+=tp[tp_index_t_3+2]; - t+=(b&inflate_mask[e]); - tp_index_t_3=(tp_index+t)*3; - if((e=tp[tp_index_t_3])==0){ - - b>>=(tp[tp_index_t_3+1]); k-=(tp[tp_index_t_3+1]); - - s.window[q++]=tp[tp_index_t_3+2]; - m--; - break; - } - } - else if((e&32)!=0){ - - c=z.avail_in-n;c=(k>>3)>3:c;n+=c;p-=c;k-=c<<3; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - - return Z_STREAM_END; - } - else{ - z.msg="invalid literal/length code"; - - c=z.avail_in-n;c=(k>>3)>3:c;n+=c;p-=c;k-=c<<3; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - - return Z_DATA_ERROR; - } - } - while(true); - } - while(m>=258 && n>= 10); - - // not enough input or output--restore pointers and return - c=z.avail_in-n;c=(k>>3)>3:c;n+=c;p-=c;k-=c<<3; - - s.bitb=b;s.bitk=k; - z.avail_in=n;z.total_in+=p-z.next_in_index;z.next_in_index=p; - s.write=q; - - return Z_OK; -} - -// -// InfTree.java -// - -function InfTree() { -} - -InfTree.prototype.huft_build = function(b, bindex, n, s, d, e, t, m, hp, hn, v) { - - // Given a list of code lengths and a maximum table size, make a set of - // tables to decode that set of codes. Return Z_OK on success, Z_BUF_ERROR - // if the given code set is incomplete (the tables are still built in this - // case), Z_DATA_ERROR if the input is invalid (an over-subscribed set of - // lengths), or Z_MEM_ERROR if not enough memory. - - var a; // counter for codes of length k - var f; // i repeats in table every f entries - var g; // maximum code length - var h; // table level - var i; // counter, current code - var j; // counter - var k; // number of bits in current code - var l; // bits per table (returned in m) - var mask; // (1 << w) - 1, to avoid cc -O bug on HP - var p; // pointer into c[], b[], or v[] - var q; // points to current table - var w; // bits before this table == (l * h) - var xp; // pointer into x - var y; // number of dummy codes added - var z; // number of entries in current table - - // Generate counts for each bit length - - p = 0; i = n; - do { - this.c[b[bindex+p]]++; p++; i--; // assume all entries <= BMAX - }while(i!=0); - - if(this.c[0] == n){ // null input--all zero length codes - t[0] = -1; - m[0] = 0; - return Z_OK; - } - - // Find minimum and maximum length, bound *m by those - l = m[0]; - for (j = 1; j <= BMAX; j++) - if(this.c[j]!=0) break; - k = j; // minimum code length - if(l < j){ - l = j; - } - for (i = BMAX; i!=0; i--){ - if(this.c[i]!=0) break; - } - g = i; // maximum code length - if(l > i){ - l = i; - } - m[0] = l; - - // Adjust last length count to fill out codes, if needed - for (y = 1 << j; j < i; j++, y <<= 1){ - if ((y -= this.c[j]) < 0){ - return Z_DATA_ERROR; - } - } - if ((y -= this.c[i]) < 0){ - return Z_DATA_ERROR; - } - this.c[i] += y; - - // Generate starting offsets into the value table for each length - this.x[1] = j = 0; - p = 1; xp = 2; - while (--i!=0) { // note that i == g from above - this.x[xp] = (j += this.c[p]); - xp++; - p++; - } - - // Make a table of values in order of bit lengths - i = 0; p = 0; - do { - if ((j = b[bindex+p]) != 0){ - this.v[this.x[j]++] = i; - } - p++; - } - while (++i < n); - n = this.x[g]; // set n to length of v - - // Generate the Huffman codes and for each, make the table entries - this.x[0] = i = 0; // first Huffman code is zero - p = 0; // grab values in bit order - h = -1; // no tables yet--level -1 - w = -l; // bits decoded == (l * h) - this.u[0] = 0; // just to keep compilers happy - q = 0; // ditto - z = 0; // ditto - - // go through the bit lengths (k already is bits in shortest code) - for (; k <= g; k++){ - a = this.c[k]; - while (a--!=0){ - // here i is the Huffman code of length k bits for value *p - // make tables up to required level - while (k > w + l){ - h++; - w += l; // previous table always l bits - // compute minimum size table less than or equal to l bits - z = g - w; - z = (z > l) ? l : z; // table size upper limit - if((f=1<<(j=k-w))>a+1){ // try a k-w bit table - // too few codes for k-w bit table - f -= a + 1; // deduct codes from patterns left - xp = k; - if(j < z){ - while (++j < z){ // try smaller tables up to z bits - if((f <<= 1) <= this.c[++xp]) - break; // enough codes to use up j bits - f -= this.c[xp]; // else deduct codes from patterns - } - } - } - z = 1 << j; // table entries for j-bit table - - // allocate new table - if (this.hn[0] + z > MANY){ // (note: doesn't matter for fixed) - return Z_DATA_ERROR; // overflow of MANY - } - this.u[h] = q = /*hp+*/ this.hn[0]; // DEBUG - this.hn[0] += z; - - // connect to last table, if there is one - if(h!=0){ - this.x[h]=i; // save pattern for backing up - this.r[0]=j; // bits in this table - this.r[1]=l; // bits to dump before this table - j=i>>>(w - l); - this.r[2] = (q - this.u[h-1] - j); // offset to this table - arrayCopy(this.r, 0, hp, (this.u[h-1]+j)*3, 3); // connect to last table - } - else{ - t[0] = q; // first table is returned result - } - } - - // set up table entry in r - this.r[1] = (k - w); - if (p >= n){ - this.r[0] = 128 + 64; // out of values--invalid code - } - else if (v[p] < s){ - this.r[0] = (this.v[p] < 256 ? 0 : 32 + 64); // 256 is end-of-block - this.r[2] = this.v[p++]; // simple code is just the value - } - else{ - this.r[0]=(e[this.v[p]-s]+16+64); // non-simple--look up in lists - this.r[2]=d[this.v[p++] - s]; - } - - // fill code-like entries with r - f=1<<(k-w); - for (j=i>>>w;j>>= 1){ - i ^= j; - } - i ^= j; - - // backup over finished tables - mask = (1 << w) - 1; // needed on HP, cc -O bug - while ((i & mask) != this.x[h]){ - h--; // don't need to update q - w -= l; - mask = (1 << w) - 1; - } - } - } - // Return Z_BUF_ERROR if we were given an incomplete table - return y != 0 && g != 1 ? Z_BUF_ERROR : Z_OK; -} - -InfTree.prototype.inflate_trees_bits = function(c, bb, tb, hp, z) { - var result; - this.initWorkArea(19); - this.hn[0]=0; - result = this.huft_build(c, 0, 19, 19, null, null, tb, bb, hp, this.hn, this.v); - - if(result == Z_DATA_ERROR){ - z.msg = "oversubscribed dynamic bit lengths tree"; - } - else if(result == Z_BUF_ERROR || bb[0] == 0){ - z.msg = "incomplete dynamic bit lengths tree"; - result = Z_DATA_ERROR; - } - return result; -} - -InfTree.prototype.inflate_trees_dynamic = function(nl, nd, c, bl, bd, tl, td, hp, z) { - var result; - - // build literal/length tree - this.initWorkArea(288); - this.hn[0]=0; - result = this.huft_build(c, 0, nl, 257, cplens, cplext, tl, bl, hp, this.hn, this.v); - if (result != Z_OK || bl[0] == 0){ - if(result == Z_DATA_ERROR){ - z.msg = "oversubscribed literal/length tree"; - } - else if (result != Z_MEM_ERROR){ - z.msg = "incomplete literal/length tree"; - result = Z_DATA_ERROR; - } - return result; - } - - // build distance tree - this.initWorkArea(288); - result = this.huft_build(c, nl, nd, 0, cpdist, cpdext, td, bd, hp, this.hn, this.v); - - if (result != Z_OK || (bd[0] == 0 && nl > 257)){ - if (result == Z_DATA_ERROR){ - z.msg = "oversubscribed distance tree"; - } - else if (result == Z_BUF_ERROR) { - z.msg = "incomplete distance tree"; - result = Z_DATA_ERROR; - } - else if (result != Z_MEM_ERROR){ - z.msg = "empty distance tree with lengths"; - result = Z_DATA_ERROR; - } - return result; - } - - return Z_OK; -} -/* - static int inflate_trees_fixed(int[] bl, //literal desired/actual bit depth - int[] bd, //distance desired/actual bit depth - int[][] tl,//literal/length tree result - int[][] td,//distance tree result - ZStream z //for memory allocation - ){ - -*/ - -function inflate_trees_fixed(bl, bd, tl, td, z) { - bl[0]=fixed_bl; - bd[0]=fixed_bd; - tl[0]=fixed_tl; - td[0]=fixed_td; - return Z_OK; -} - -InfTree.prototype.initWorkArea = function(vsize){ - if(this.hn==null){ - this.hn=new Int32Array(1); - this.v=new Int32Array(vsize); - this.c=new Int32Array(BMAX+1); - this.r=new Int32Array(3); - this.u=new Int32Array(BMAX); - this.x=new Int32Array(BMAX+1); - } - if(this.v.length 100) { - arrayCopy_fast(new Uint8Array(src.buffer, src.byteOffset + srcOffset, count), dest, destOffset); - } else { - arrayCopy_slow(src, srcOffset, dest, destOffset, count); - } - -} - -function arrayCopy_slow(src, srcOffset, dest, destOffset, count) { - - // dlog('_slow call: srcOffset=' + srcOffset + '; destOffset=' + destOffset + '; count=' + count); - - for (var i = 0; i < count; ++i) { - dest[destOffset + i] = src[srcOffset + i]; - } -} - -function arrayCopy_fast(src, dest, destOffset) { - dest.set(src, destOffset); -} - - - // largest prime smaller than 65536 -var ADLER_BASE=65521; - // NMAX is the largest n such that 255n(n+1)/2 + (n+1)(BASE-1) <= 2^32-1 -var ADLER_NMAX=5552; - -function adler32(adler, /* byte[] */ buf, index, len){ - if(buf == null){ return 1; } - - var s1=adler&0xffff; - var s2=(adler>>16)&0xffff; - var k; - - while(len > 0) { - k=len=16){ - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - s1+=buf[index++]&0xff; s2+=s1; - k-=16; - } - if(k!=0){ - do{ - s1+=buf[index++]&0xff; s2+=s1; - } - while(--k!=0); - } - s1%=ADLER_BASE; - s2%=ADLER_BASE; - } - return (s2<<16)|s1; -} - - - -function jszlib_inflate_buffer(buffer, start, length, afterUncOffset) { - if (!start) { - buffer = new Uint8Array(buffer); - } else if (!length) { - buffer = new Uint8Array(buffer, start, buffer.byteLength - start); - } else { - buffer = new Uint8Array(buffer, start, length); - } - - var z = new ZStream(); - z.inflateInit(DEF_WBITS, true); - z.next_in = buffer; - z.next_in_index = 0; - z.avail_in = buffer.length; - - var oBlockList = []; - var totalSize = 0; - while (true) { - var obuf = new Uint8Array(32000); - z.next_out = obuf; - z.next_out_index = 0; - z.avail_out = obuf.length; - var status = z.inflate(Z_NO_FLUSH); - if (status != Z_OK && status != Z_STREAM_END && status != Z_BUF_ERROR) { - throw z.msg; - } - if (z.avail_out != 0) { - var newob = new Uint8Array(obuf.length - z.avail_out); - arrayCopy(obuf, 0, newob, 0, (obuf.length - z.avail_out)); - obuf = newob; - } - oBlockList.push(obuf); - totalSize += obuf.length; - if (status == Z_STREAM_END || status == Z_BUF_ERROR) { - break; - } - } - - if (afterUncOffset) { - afterUncOffset[0] = (start || 0) + z.next_in_index; - } - - if (oBlockList.length == 1) { - return oBlockList[0].buffer; - } else { - var out = new Uint8Array(totalSize); - var cursor = 0; - for (var i = 0; i < oBlockList.length; ++i) { - var b = oBlockList[i]; - arrayCopy(b, 0, out, cursor, b.length); - cursor += b.length; - } - return out.buffer; - } -} - -return { - inflateBuffer: jszlib_inflate_buffer, - arrayCopy: arrayCopy - }; -}); diff --git a/client/src/libs/bbi/spans.js b/client/src/libs/bbi/spans.js deleted file mode 100644 index 7c61b8594c4a..000000000000 --- a/client/src/libs/bbi/spans.js +++ /dev/null @@ -1,257 +0,0 @@ -/* -*- mode: javascript; c-basic-offset: 4; indent-tabs-mode: nil -*- */ - -// -// Dalliance Genome Explorer -// (c) Thomas Down 2006-2010 -// -// spans.js: JavaScript Intset/Location port. -// - -define([], function() { - -"use strict"; - - -function Range(min, max) -{ - if (typeof(min) != 'number' || typeof(max) != 'number') - throw 'Bad range ' + min + ',' + max; - this._min = min; - this._max = max; -} - -Range.prototype.min = function() { - return this._min; -} - -Range.prototype.max = function() { - return this._max; -} - -Range.prototype.contains = function(pos) { - return pos >= this._min && pos <= this._max; -} - -Range.prototype.isContiguous = function() { - return true; -} - -Range.prototype.ranges = function() { - return [this]; -} - -Range.prototype._pushRanges = function(ranges) { - ranges.push(this); -} - -Range.prototype.toString = function() { - return '[' + this._min + '-' + this._max + ']'; -} - -function _Compound(ranges) { - // given: a set of unsorted possibly overlapping ranges - // sort the input ranges - var sorted = ranges.sort(_rangeOrder); - // merge overlaps between adjacent ranges - var merged = []; - var current = sorted.shift(); - sorted.forEach(function(range) { - if (range._min <= current._max) { - if (range._max > current._max) { - current._max = range._max; - } - } - else { - merged.push(current); - current = range; - } - }); - merged.push(current); - this._ranges = merged; -} - -_Compound.prototype.min = function() { - return this._ranges[0].min(); -} - -_Compound.prototype.max = function() { - return this._ranges[this._ranges.length - 1].max(); -} - -// returns the index of the first range that is not less than pos -_Compound.prototype.lower_bound = function(pos) { - // first check if pos is out of range - var r = this.ranges(); - if (pos > this.max()) return r.length; - if (pos < this.min()) return 0; - // do a binary search - var a=0, b=r.length - 1; - while (a <= b) { - var m = Math.floor((a+b)/2); - if (pos > r[m]._max) { - a = m+1; - } - else if (pos < r[m]._min) { - b = m-1; - } - else { - return m; - } - } - return a; -} - -_Compound.prototype.contains = function(pos) { - var lb = this.lower_bound(pos); - if (lb < this._ranges.length && this._ranges[lb].contains(pos)) { - return true; - } - return false; -} - -_Compound.prototype.insertRange = function(range) { - var lb = this.lower_bound(range._min); - if (lb === this._ranges.length) { // range follows this - this._ranges.push(range); - return; - } - - var r = this.ranges(); - if (range._max < r[lb]._min) { // range preceeds lb - this._ranges.splice(lb,0,range); - return; - } - - // range overlaps lb (at least) - if (r[lb]._min < range._min) range._min = r[lb]._min; - var ub = lb+1; - while (ub < r.length && r[ub]._min <= range._max) { - ub++; - } - ub--; - // ub is the upper bound of the new range - if (r[ub]._max > range._max) range._max = r[ub]._max; - - // splice range into this._ranges - this._ranges.splice(lb,ub-lb+1,range); - return; -} - -_Compound.prototype.isContiguous = function() { - return this._ranges.length > 1; -} - -_Compound.prototype.ranges = function() { - return this._ranges; -} - -_Compound.prototype._pushRanges = function(ranges) { - for (var ri = 0; ri < this._ranges.length; ++ri) - ranges.push(this._ranges[ri]); -} - -_Compound.prototype.toString = function() { - var s = ''; - for (var r = 0; r < this._ranges.length; ++r) { - if (r>0) { - s = s + ','; - } - s = s + this._ranges[r].toString(); - } - return s; -} - -function union(s0, s1) { - if (! (s0 instanceof _Compound)) { - if (! (s0 instanceof Array)) - s0 = [s0]; - s0 = new _Compound(s0); - } - - if (s1) - s0.insertRange(s1); - - return s0; -} - -function intersection(s0, s1) { - var r0 = s0.ranges(); - var r1 = s1.ranges(); - var l0 = r0.length, l1 = r1.length; - var i0 = 0, i1 = 0; - var or = []; - - while (i0 < l0 && i1 < l1) { - var s0 = r0[i0], s1 = r1[i1]; - var lapMin = Math.max(s0.min(), s1.min()); - var lapMax = Math.min(s0.max(), s1.max()); - if (lapMax >= lapMin) { - or.push(new Range(lapMin, lapMax)); - } - if (s0.max() > s1.max()) { - ++i1; - } else { - ++i0; - } - } - - if (or.length == 0) { - return null; // FIXME - } else if (or.length == 1) { - return or[0]; - } else { - return new _Compound(or); - } -} - -function coverage(s) { - var tot = 0; - var rl = s.ranges(); - for (var ri = 0; ri < rl.length; ++ri) { - var r = rl[ri]; - tot += (r.max() - r.min() + 1); - } - return tot; -} - - - -function rangeOrder(a, b) -{ - if (a.min() < b.min()) { - return -1; - } else if (a.min() > b.min()) { - return 1; - } else if (a.max() < b.max()) { - return -1; - } else if (b.max() > a.max()) { - return 1; - } else { - return 0; - } -} - -function _rangeOrder(a, b) -{ - if (a._min < b._min) { - return -1; - } else if (a._min > b._min) { - return 1; - } else if (a._max < b._max) { - return -1; - } else if (b._max > a._max) { - return 1; - } else { - return 0; - } -} - -return { - Range: Range, - union: union, - intersection: intersection, - coverage: coverage, - rangeOver: rangeOrder, - _rangeOrder: _rangeOrder -}; -}); diff --git a/client/src/libs/farbtastic.js b/client/src/libs/farbtastic.js deleted file mode 100644 index 01e1173b69f6..000000000000 --- a/client/src/libs/farbtastic.js +++ /dev/null @@ -1,516 +0,0 @@ -// Farbtastic 2.0.0-alpha.1 -(function ($) { - -var __debug = false; - -$.fn.farbtastic = function (options) { - $.farbtastic(this, options); - return this; -}; - -$.farbtastic = function (container, options) { - var container = $(container)[0]; - return container.farbtastic || (container.farbtastic = new $._farbtastic(container, options)); -} - -$._farbtastic = function (container, options) { - var fb = this; - - ///////////////////////////////////////////////////// - - /** - * Link to the given element(s) or callback. - */ - fb.linkTo = function (callback) { - // Unbind previous nodes - if (typeof fb.callback == 'object') { - $(fb.callback).unbind('keyup', fb.updateValue); - } - - // Reset color - fb.color = null; - - // Bind callback or elements - if (typeof callback == 'function') { - fb.callback = callback; - } - else if (typeof callback == 'object' || typeof callback == 'string') { - fb.callback = $(callback); - fb.callback.bind('keyup', fb.updateValue); - if (fb.callback[0].value) { - fb.setColor(fb.callback[0].value); - } - } - return this; - } - fb.updateValue = function (event) { - if (this.value && this.value != fb.color) { - fb.setColor(this.value); - } - } - - /** - * Change color with HTML syntax #123456 - */ - fb.setColor = function (color) { - var unpack = fb.unpack(color); - if (fb.color != color && unpack) { - fb.color = color; - fb.rgb = unpack; - fb.hsl = fb.RGBToHSL(fb.rgb); - fb.updateDisplay(); - } - return this; - } - - /** - * Change color with HSL triplet [0..1, 0..1, 0..1] - */ - fb.setHSL = function (hsl) { - fb.hsl = hsl; - fb.rgb = fb.HSLToRGB(hsl); - fb.color = fb.pack(fb.rgb); - fb.updateDisplay(); - return this; - } - - ///////////////////////////////////////////////////// - - /** - * Initialize the color picker widget. - */ - fb.initWidget = function () { - - // Insert markup and size accordingly. - var dim = { - width: options.width, - height: options.width - }; - $(container) - .html( - '
' + - '
' + - '' + - '' + - '
' - ) - .find('*').attr(dim).css(dim).end() - .find('div>*').css('position', 'absolute'); - - // IE Fix: Recreate canvas elements with doc.createElement and excanvas. - $.browser.msie || false && $('canvas', container).each(function () { - // Fetch info. - var attr = { 'class': $(this).attr('class'), style: this.getAttribute('style') }, - e = document.createElement('canvas'); - // Replace element. - $(this).before($(e).attr(attr)).remove(); - // Init with explorerCanvas. - G_vmlCanvasManager && G_vmlCanvasManager.initElement(e); - // Set explorerCanvas elements dimensions and absolute positioning. - $(e).attr(dim).css(dim).css('position', 'absolute') - .find('*').attr(dim).css(dim); - }); - - // Determine layout - fb.radius = (options.width - options.wheelWidth) / 2 - 1; - fb.square = Math.floor((fb.radius - options.wheelWidth / 2) * 0.7) - 1; - fb.mid = Math.floor(options.width / 2); - fb.markerSize = options.wheelWidth * 0.3; - fb.solidFill = $('.farbtastic-solid', container).css({ - width: fb.square * 2 - 1, - height: fb.square * 2 - 1, - left: fb.mid - fb.square, - top: fb.mid - fb.square - }); - - // Set up drawing context. - fb.cnvMask = $('.farbtastic-mask', container); - fb.ctxMask = fb.cnvMask[0].getContext('2d'); - fb.cnvOverlay = $('.farbtastic-overlay', container); - fb.ctxOverlay = fb.cnvOverlay[0].getContext('2d'); - fb.ctxMask.translate(fb.mid, fb.mid); - fb.ctxOverlay.translate(fb.mid, fb.mid); - - // Draw widget base layers. - fb.drawCircle(); - fb.drawMask(); - } - - /** - * Draw the color wheel. - */ - fb.drawCircle = function () { - var tm = +(new Date()); - // Draw a hue circle with a bunch of gradient-stroked beziers. - // Have to use beziers, as gradient-stroked arcs don't work. - var n = 24, - r = fb.radius, - w = options.wheelWidth, - nudge = 8 / r / n * Math.PI, // Fudge factor for seams. - m = fb.ctxMask, - angle1 = 0, color1, d1; - m.save(); - m.lineWidth = w / r; - m.scale(r, r); - // Each segment goes from angle1 to angle2. - for (var i = 0; i <= n; ++i) { - var d2 = i / n, - angle2 = d2 * Math.PI * 2, - // Endpoints - x1 = Math.sin(angle1), y1 = -Math.cos(angle1); - x2 = Math.sin(angle2), y2 = -Math.cos(angle2), - // Midpoint chosen so that the endpoints are tangent to the circle. - am = (angle1 + angle2) / 2, - tan = 1 / Math.cos((angle2 - angle1) / 2), - xm = Math.sin(am) * tan, ym = -Math.cos(am) * tan, - // New color - color2 = fb.pack(fb.HSLToRGB([d2, 1, 0.5])); - if (i > 0) { - if ($.browser.msie || false) { - // IE's gradient calculations mess up the colors. Correct along the diagonals. - var corr = (1 + Math.min(Math.abs(Math.tan(angle1)), Math.abs(Math.tan(Math.PI / 2 - angle1)))) / n; - color1 = fb.pack(fb.HSLToRGB([d1 - 0.15 * corr, 1, 0.5])); - color2 = fb.pack(fb.HSLToRGB([d2 + 0.15 * corr, 1, 0.5])); - // Create gradient fill between the endpoints. - var grad = m.createLinearGradient(x1, y1, x2, y2); - grad.addColorStop(0, color1); - grad.addColorStop(1, color2); - m.fillStyle = grad; - // Draw quadratic curve segment as a fill. - var r1 = (r + w / 2) / r, r2 = (r - w / 2) / r; // inner/outer radius. - m.beginPath(); - m.moveTo(x1 * r1, y1 * r1); - m.quadraticCurveTo(xm * r1, ym * r1, x2 * r1, y2 * r1); - m.lineTo(x2 * r2, y2 * r2); - m.quadraticCurveTo(xm * r2, ym * r2, x1 * r2, y1 * r2); - m.fill(); - } - else { - // Create gradient fill between the endpoints. - var grad = m.createLinearGradient(x1, y1, x2, y2); - grad.addColorStop(0, color1); - grad.addColorStop(1, color2); - m.strokeStyle = grad; - // Draw quadratic curve segment. - m.beginPath(); - m.moveTo(x1, y1); - m.quadraticCurveTo(xm, ym, x2, y2); - m.stroke(); - } - } - // Prevent seams where curves join. - angle1 = angle2 - nudge; color1 = color2; d1 = d2; - } - m.restore(); - __debug && $('body').append('
drawCircle '+ (+(new Date()) - tm) +'ms'); - }; - - /** - * Draw the saturation/luminance mask. - */ - fb.drawMask = function () { - var tm = +(new Date()); - - // Iterate over sat/lum space and calculate appropriate mask pixel values. - var size = fb.square * 2, sq = fb.square; - function calculateMask(sizex, sizey, outputPixel) { - var isx = 1 / sizex, isy = 1 / sizey; - for (var y = 0; y <= sizey; ++y) { - var l = 1 - y * isy; - for (var x = 0; x <= sizex; ++x) { - var s = 1 - x * isx; - // From sat/lum to alpha and color (grayscale) - var a = 1 - 2 * Math.min(l * s, (1 - l) * s); - var c = (a > 0) ? ((2 * l - 1 + a) * .5 / a) : 0; - outputPixel(x, y, c, a); - } - } - } - - // Method #1: direct pixel access (new Canvas). - if (fb.ctxMask.getImageData) { - // Create half-resolution buffer. - var sz = Math.floor(size / 2); - var buffer = document.createElement('canvas'); - buffer.width = buffer.height = sz + 1; - var ctx = buffer.getContext('2d'); - var frame = ctx.getImageData(0, 0, sz + 1, sz + 1); - - var i = 0; - calculateMask(sz, sz, function (x, y, c, a) { - frame.data[i++] = frame.data[i++] = frame.data[i++] = c * 255; - frame.data[i++] = a * 255; - }); - - ctx.putImageData(frame, 0, 0); - fb.ctxMask.drawImage(buffer, 0, 0, sz + 1, sz + 1, -sq, -sq, sq * 2, sq * 2); - } - // Method #2: drawing commands (old Canvas). - else if (!($.browser.msie || false)) { - // Render directly at half-resolution - var sz = Math.floor(size / 2); - calculateMask(sz, sz, function (x, y, c, a) { - c = Math.round(c * 255); - fb.ctxMask.fillStyle = 'rgba(' + c + ', ' + c + ', ' + c + ', ' + a +')'; - fb.ctxMask.fillRect(x * 2 - sq - 1, y * 2 - sq - 1, 2, 2); - }); - } - // Method #3: vertical DXImageTransform gradient strips (IE). - else { - var cache_last, cache, w = 6; // Each strip is 6 pixels wide. - var sizex = Math.floor(size / w); - // 6 vertical pieces of gradient per strip. - calculateMask(sizex, 6, function (x, y, c, a) { - if (x == 0) { - cache_last = cache; - cache = []; - } - c = Math.round(c * 255); - a = Math.round(a * 255); - // We can only start outputting gradients once we have two rows of pixels. - if (y > 0) { - var c_last = cache_last[x][0], - a_last = cache_last[x][1], - color1 = fb.packDX(c_last, a_last), - color2 = fb.packDX(c, a), - y1 = Math.round(fb.mid + ((y - 1) * .333 - 1) * sq), - y2 = Math.round(fb.mid + (y * .333 - 1) * sq); - $('
').css({ - position: 'absolute', - filter: "progid:DXImageTransform.Microsoft.Gradient(StartColorStr="+ color1 +", EndColorStr="+ color2 +", GradientType=0)", - top: y1, - height: y2 - y1, - // Avoid right-edge sticking out. - left: fb.mid + (x * w - sq - 1), - width: w - (x == sizex ? Math.round(w / 2) : 0) - }).appendTo(fb.cnvMask); - } - cache.push([c, a]); - }); - } - __debug && $('body').append('
drawMask '+ (+(new Date()) - tm) +'ms'); - } - - /** - * Draw the selection markers. - */ - fb.drawMarkers = function () { - // Determine marker dimensions - var sz = options.width, lw = Math.ceil(fb.markerSize / 4), r = fb.markerSize - lw + 1; - var angle = fb.hsl[0] * 6.28, - x1 = Math.sin(angle) * fb.radius, - y1 = -Math.cos(angle) * fb.radius, - x2 = 2 * fb.square * (.5 - fb.hsl[1]), - y2 = 2 * fb.square * (.5 - fb.hsl[2]), - c1 = fb.invert ? '#fff' : '#000', - c2 = fb.invert ? '#000' : '#fff'; - var circles = [ - { x: x1, y: y1, r: r, c: '#000', lw: lw + 1 }, - { x: x1, y: y1, r: fb.markerSize, c: '#fff', lw: lw }, - { x: x2, y: y2, r: r, c: c2, lw: lw + 1 }, - { x: x2, y: y2, r: fb.markerSize, c: c1, lw: lw }, - ]; - - // Update the overlay canvas. - fb.ctxOverlay.clearRect(-fb.mid, -fb.mid, sz, sz); - for (var i = 0; i < circles.length; i++) { - var c = circles[i]; - fb.ctxOverlay.lineWidth = c.lw; - fb.ctxOverlay.strokeStyle = c.c; - fb.ctxOverlay.beginPath(); - fb.ctxOverlay.arc(c.x, c.y, c.r, 0, Math.PI * 2, true); - fb.ctxOverlay.stroke(); - } - } - - /** - * Update the markers and styles - */ - fb.updateDisplay = function () { - // Determine whether labels/markers should invert. - fb.invert = (fb.rgb[0] * 0.3 + fb.rgb[1] * .59 + fb.rgb[2] * .11) <= 0.6; - - // Update the solid background fill. - fb.solidFill.css('backgroundColor', fb.pack(fb.HSLToRGB([fb.hsl[0], 1, 0.5]))); - - // Draw markers - fb.drawMarkers(); - - // Linked elements or callback - if (typeof fb.callback == 'object') { - // Set background/foreground color - $(fb.callback).css({ - backgroundColor: fb.color, - color: fb.invert ? '#fff' : '#000' - }); - - // Change linked value - $(fb.callback).each(function() { - if ((typeof this.value == 'string') && this.value != fb.color) { - this.value = fb.color; - } - }).change(); - } - else if (typeof fb.callback == 'function') { - fb.callback.call(fb, fb.color); - } - } - - /** - * Helper for returning coordinates relative to the center. - */ - fb.widgetCoords = function (event) { - return { - x: event.pageX - fb.offset.left - fb.mid, - y: event.pageY - fb.offset.top - fb.mid - }; - } - - /** - * Mousedown handler - */ - fb.mousedown = function (event) { - // Capture mouse - if (!$._farbtastic.dragging) { - $(document).bind('mousemove', fb.mousemove).bind('mouseup', fb.mouseup); - $._farbtastic.dragging = true; - } - - // Update the stored offset for the widget. - fb.offset = $(container).offset(); - - // Check which area is being dragged - var pos = fb.widgetCoords(event); - fb.circleDrag = Math.max(Math.abs(pos.x), Math.abs(pos.y)) > (fb.square + 2); - - // Process - fb.mousemove(event); - return false; - } - - /** - * Mousemove handler - */ - fb.mousemove = function (event) { - // Get coordinates relative to color picker center - var pos = fb.widgetCoords(event); - - // Set new HSL parameters - if (fb.circleDrag) { - var hue = Math.atan2(pos.x, -pos.y) / 6.28; - fb.setHSL([(hue + 1) % 1, fb.hsl[1], fb.hsl[2]]); - } - else { - var sat = Math.max(0, Math.min(1, -(pos.x / fb.square / 2) + .5)); - var lum = Math.max(0, Math.min(1, -(pos.y / fb.square / 2) + .5)); - fb.setHSL([fb.hsl[0], sat, lum]); - } - return false; - } - - /** - * Mouseup handler - */ - fb.mouseup = function () { - // Uncapture mouse - $(document).unbind('mousemove', fb.mousemove); - $(document).unbind('mouseup', fb.mouseup); - $._farbtastic.dragging = false; - } - - /* Various color utility functions */ - fb.dec2hex = function (x) { - return (x < 16 ? '0' : '') + x.toString(16); - } - - fb.packDX = function (c, a) { - return '#' + fb.dec2hex(a) + fb.dec2hex(c) + fb.dec2hex(c) + fb.dec2hex(c); - }; - - fb.pack = function (rgb) { - var r = Math.round(rgb[0] * 255); - var g = Math.round(rgb[1] * 255); - var b = Math.round(rgb[2] * 255); - return '#' + fb.dec2hex(r) + fb.dec2hex(g) + fb.dec2hex(b); - }; - - fb.unpack = function (color) { - if (color.length == 7) { - function x(i) { - return parseInt(color.substring(i, i + 2), 16) / 255; - } - return [ x(1), x(3), x(5) ]; - } - else if (color.length == 4) { - function x(i) { - return parseInt(color.substring(i, i + 1), 16) / 15; - } - return [ x(1), x(2), x(3) ]; - } - }; - - fb.HSLToRGB = function (hsl) { - var m1, m2, r, g, b; - var h = hsl[0], s = hsl[1], l = hsl[2]; - m2 = (l <= 0.5) ? l * (s + 1) : l + s - l * s; - m1 = l * 2 - m2; - return [ - this.hueToRGB(m1, m2, h + 0.33333), - this.hueToRGB(m1, m2, h), - this.hueToRGB(m1, m2, h - 0.33333) - ]; - }; - - fb.hueToRGB = function (m1, m2, h) { - h = (h + 1) % 1; - if (h * 6 < 1) return m1 + (m2 - m1) * h * 6; - if (h * 2 < 1) return m2; - if (h * 3 < 2) return m1 + (m2 - m1) * (0.66666 - h) * 6; - return m1; - }; - - fb.RGBToHSL = function (rgb) { - var r = rgb[0], g = rgb[1], b = rgb[2], - min = Math.min(r, g, b), - max = Math.max(r, g, b), - delta = max - min, - h = 0, - s = 0, - l = (min + max) / 2; - if (l > 0 && l < 1) { - s = delta / (l < 0.5 ? (2 * l) : (2 - 2 * l)); - } - if (delta > 0) { - if (max == r && max != g) h += (g - b) / delta; - if (max == g && max != b) h += (2 + (b - r) / delta); - if (max == b && max != r) h += (4 + (r - g) / delta); - h /= 6; - } - return [h, s, l]; - }; - - // Parse options. - if (!options.callback) { - options = { callback: options }; - } - options = $.extend({ - width: 300, - wheelWidth: (options.width || 300) / 10, - callback: null - }, options); - - // Initialize. - fb.initWidget(); - - // Install mousedown handler (the others are set on the document on-demand) - $('canvas.farbtastic-overlay', container).mousedown(fb.mousedown); - - // Set linked elements/callback - if (options.callback) { - fb.linkTo(options.callback); - } - // Set to gray. - if (!fb.color) fb.setColor('#808080'); -} - -})(jQuery); diff --git a/client/src/libs/jquery.custom.js b/client/src/libs/jquery.custom.js deleted file mode 100644 index 0d87a38b5078..000000000000 --- a/client/src/libs/jquery.custom.js +++ /dev/null @@ -1,29 +0,0 @@ -/** - * jQuery and all its horrible plugins. Bundled together and repackaged into a - * single module, then aliased by webpack as "jquery" - */ - -var jQuery = require("jqueryVendor"); - -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.autocomplete"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.event.hover"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.event.drag"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.event.drop"); -// TODO: replace mousewheel events -// require("imports-loader?imports=default|jquery|jqueryVendor,define=>false!jquery-mousewheel"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.form"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.rating"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/select2"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery-ui"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/farbtastic"); -// TODO: ensure unused -//require("imports-loader?imports=default|jquery|jqueryVendor,define=>false!jquery.cookie"); -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery/jquery.dynatree"); -require("imports-loader?imports=default|jqueryVendor|jQuery!jquery-migrate"); - -// require("imports-loader?jQuery=jqueryVendor!../ui/autocom_tagging"); - -// Only used in reports -require("imports-loader?imports=default|jqueryVendor|jQuery!libs/jquery.sparklines"); - -module.exports = jQuery; diff --git a/client/src/libs/jquery.sparklines.js b/client/src/libs/jquery.sparklines.js deleted file mode 100644 index 43b24c080a6e..000000000000 --- a/client/src/libs/jquery.sparklines.js +++ /dev/null @@ -1,3054 +0,0 @@ -/** -* -* jquery.sparkline.js -* -* v2.1.2 -* (c) Splunk, Inc -* Contact: Gareth Watts (gareth@splunk.com) -* http://omnipotent.net/jquery.sparkline/ -* -* Generates inline sparkline charts from data supplied either to the method -* or inline in HTML -* -* Compatible with Internet Explorer 6.0+ and modern browsers equipped with the canvas tag -* (Firefox 2.0+, Safari, Opera, etc) -* -* License: New BSD License -* -* Copyright (c) 2012, Splunk Inc. -* All rights reserved. -* -* Redistribution and use in source and binary forms, with or without modification, -* are permitted provided that the following conditions are met: -* -* * Redistributions of source code must retain the above copyright notice, -* this list of conditions and the following disclaimer. -* * Redistributions in binary form must reproduce the above copyright notice, -* this list of conditions and the following disclaimer in the documentation -* and/or other materials provided with the distribution. -* * Neither the name of Splunk Inc nor the names of its contributors may -* be used to endorse or promote products derived from this software without -* specific prior written permission. -* -* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY -* EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES -* OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT -* SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT -* OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) -* HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, -* OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS -* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -* -* -* Usage: -* $(selector).sparkline(values, options) -* -* If values is undefined or set to 'html' then the data values are read from the specified tag: -*

Sparkline: 1,4,6,6,8,5,3,5

-* $('.sparkline').sparkline(); -* There must be no spaces in the enclosed data set -* -* Otherwise values must be an array of numbers or null values -*

Sparkline: This text replaced if the browser is compatible

-* $('#sparkline1').sparkline([1,4,6,6,8,5,3,5]) -* $('#sparkline2').sparkline([1,4,6,null,null,5,3,5]) -* -* Values can also be specified in an HTML comment, or as a values attribute: -*

Sparkline:

-*

Sparkline:

-* $('.sparkline').sparkline(); -* -* For line charts, x values can also be specified: -*

Sparkline: 1:1,2.7:4,3.4:6,5:6,6:8,8.7:5,9:3,10:5

-* $('#sparkline1').sparkline([ [1,1], [2.7,4], [3.4,6], [5,6], [6,8], [8.7,5], [9,3], [10,5] ]) -* -* By default, options should be passed in as teh second argument to the sparkline function: -* $('.sparkline').sparkline([1,2,3,4], {type: 'bar'}) -* -* Options can also be set by passing them on the tag itself. This feature is disabled by default though -* as there's a slight performance overhead: -* $('.sparkline').sparkline([1,2,3,4], {enableTagOptions: true}) -*

Sparkline: loading

-* Prefix all options supplied as tag attribute with "spark" (configurable by setting tagOptionPrefix) -* -* Supported options: -* lineColor - Color of the line used for the chart -* fillColor - Color used to fill in the chart - Set to '' or false for a transparent chart -* width - Width of the chart - Defaults to 3 times the number of values in pixels -* height - Height of the chart - Defaults to the height of the containing element -* chartRangeMin - Specify the minimum value to use for the Y range of the chart - Defaults to the minimum value supplied -* chartRangeMax - Specify the maximum value to use for the Y range of the chart - Defaults to the maximum value supplied -* chartRangeClip - Clip out of range values to the max/min specified by chartRangeMin and chartRangeMax -* chartRangeMinX - Specify the minimum value to use for the X range of the chart - Defaults to the minimum value supplied -* chartRangeMaxX - Specify the maximum value to use for the X range of the chart - Defaults to the maximum value supplied -* composite - If true then don't erase any existing chart attached to the tag, but draw -* another chart over the top - Note that width and height are ignored if an -* existing chart is detected. -* tagValuesAttribute - Name of tag attribute to check for data values - Defaults to 'values' -* enableTagOptions - Whether to check tags for sparkline options -* tagOptionPrefix - Prefix used for options supplied as tag attributes - Defaults to 'spark' -* disableHiddenCheck - If set to true, then the plugin will assume that charts will never be drawn into a -* hidden dom element, avoding a browser reflow -* disableInteraction - If set to true then all mouseover/click interaction behaviour will be disabled, -* making the plugin perform much like it did in 1.x -* disableTooltips - If set to true then tooltips will be disabled - Defaults to false (tooltips enabled) -* disableHighlight - If set to true then highlighting of selected chart elements on mouseover will be disabled -* defaults to false (highlights enabled) -* highlightLighten - Factor to lighten/darken highlighted chart values by - Defaults to 1.4 for a 40% increase -* tooltipContainer - Specify which DOM element the tooltip should be rendered into - defaults to document.body -* tooltipClassname - Optional CSS classname to apply to tooltips - If not specified then a default style will be applied -* tooltipOffsetX - How many pixels away from the mouse pointer to render the tooltip on the X axis -* tooltipOffsetY - How many pixels away from the mouse pointer to render the tooltip on the r axis -* tooltipFormatter - Optional callback that allows you to override the HTML displayed in the tooltip -* callback is given arguments of (sparkline, options, fields) -* tooltipChartTitle - If specified then the tooltip uses the string specified by this setting as a title -* tooltipFormat - A format string or SPFormat object (or an array thereof for multiple entries) -* to control the format of the tooltip -* tooltipPrefix - A string to prepend to each field displayed in a tooltip -* tooltipSuffix - A string to append to each field displayed in a tooltip -* tooltipSkipNull - If true then null values will not have a tooltip displayed (defaults to true) -* tooltipValueLookups - An object or range map to map field values to tooltip strings -* (eg. to map -1 to "Lost", 0 to "Draw", and 1 to "Win") -* numberFormatter - Optional callback for formatting numbers in tooltips -* numberDigitGroupSep - Character to use for group separator in numbers "1,234" - Defaults to "," -* numberDecimalMark - Character to use for the decimal point when formatting numbers - Defaults to "." -* numberDigitGroupCount - Number of digits between group separator - Defaults to 3 -* -* There are 7 types of sparkline, selected by supplying a "type" option of 'line' (default), -* 'bar', 'tristate', 'bullet', 'discrete', 'pie' or 'box' -* line - Line chart. Options: -* spotColor - Set to '' to not end each line in a circular spot -* minSpotColor - If set, color of spot at minimum value -* maxSpotColor - If set, color of spot at maximum value -* spotRadius - Radius in pixels -* lineWidth - Width of line in pixels -* normalRangeMin -* normalRangeMax - If set draws a filled horizontal bar between these two values marking the "normal" -* or expected range of values -* normalRangeColor - Color to use for the above bar -* drawNormalOnTop - Draw the normal range above the chart fill color if true -* defaultPixelsPerValue - Defaults to 3 pixels of width for each value in the chart -* highlightSpotColor - The color to use for drawing a highlight spot on mouseover - Set to null to disable -* highlightLineColor - The color to use for drawing a highlight line on mouseover - Set to null to disable -* valueSpots - Specify which points to draw spots on, and in which color. Accepts a range map -* -* bar - Bar chart. Options: -* barColor - Color of bars for postive values -* negBarColor - Color of bars for negative values -* zeroColor - Color of bars with zero values -* nullColor - Color of bars with null values - Defaults to omitting the bar entirely -* barWidth - Width of bars in pixels -* colorMap - Optional mappnig of values to colors to override the *BarColor values above -* can be an Array of values to control the color of individual bars or a range map -* to specify colors for individual ranges of values -* barSpacing - Gap between bars in pixels -* zeroAxis - Centers the y-axis around zero if true -* -* tristate - Charts values of win (>0), lose (<0) or draw (=0) -* posBarColor - Color of win values -* negBarColor - Color of lose values -* zeroBarColor - Color of draw values -* barWidth - Width of bars in pixels -* barSpacing - Gap between bars in pixels -* colorMap - Optional mappnig of values to colors to override the *BarColor values above -* can be an Array of values to control the color of individual bars or a range map -* to specify colors for individual ranges of values -* -* discrete - Options: -* lineHeight - Height of each line in pixels - Defaults to 30% of the graph height -* thesholdValue - Values less than this value will be drawn using thresholdColor instead of lineColor -* thresholdColor -* -* bullet - Values for bullet graphs msut be in the order: target, performance, range1, range2, range3, ... -* options: -* targetColor - The color of the vertical target marker -* targetWidth - The width of the target marker in pixels -* performanceColor - The color of the performance measure horizontal bar -* rangeColors - Colors to use for each qualitative range background color -* -* pie - Pie chart. Options: -* sliceColors - An array of colors to use for pie slices -* offset - Angle in degrees to offset the first slice - Try -90 or +90 -* borderWidth - Width of border to draw around the pie chart, in pixels - Defaults to 0 (no border) -* borderColor - Color to use for the pie chart border - Defaults to #000 -* -* box - Box plot. Options: -* raw - Set to true to supply pre-computed plot points as values -* values should be: low_outlier, low_whisker, q1, median, q3, high_whisker, high_outlier -* When set to false you can supply any number of values and the box plot will -* be computed for you. Default is false. -* showOutliers - Set to true (default) to display outliers as circles -* outlierIQR - Interquartile range used to determine outliers. Default 1.5 -* boxLineColor - Outline color of the box -* boxFillColor - Fill color for the box -* whiskerColor - Line color used for whiskers -* outlierLineColor - Outline color of outlier circles -* outlierFillColor - Fill color of the outlier circles -* spotRadius - Radius of outlier circles -* medianColor - Line color of the median line -* target - Draw a target cross hair at the supplied value (default undefined) -* -* -* -* Examples: -* $('#sparkline1').sparkline(myvalues, { lineColor: '#f00', fillColor: false }); -* $('.barsparks').sparkline('html', { type:'bar', height:'40px', barWidth:5 }); -* $('#tristate').sparkline([1,1,-1,1,0,0,-1], { type:'tristate' }): -* $('#discrete').sparkline([1,3,4,5,5,3,4,5], { type:'discrete' }); -* $('#bullet').sparkline([10,12,12,9,7], { type:'bullet' }); -* $('#pie').sparkline([1,1,2], { type:'pie' }); -*/ - -/*jslint regexp: true, browser: true, jquery: true, white: true, nomen: false, plusplus: false, maxerr: 500, indent: 4 */ - -(function(document, Math, undefined) { // performance/minified-size optimization -(function(factory) { - if(typeof define === 'function' && define.amd) { - define(['jquery'], factory); - } else if (jQuery && !jQuery.fn.sparkline) { - factory(jQuery); - } -} -(function($) { - 'use strict'; - - var UNSET_OPTION = {}, - getDefaults, createClass, SPFormat, clipval, quartile, normalizeValue, normalizeValues, - remove, isNumber, all, sum, addCSS, ensureArray, formatNumber, RangeMap, - MouseHandler, Tooltip, barHighlightMixin, - line, bar, tristate, discrete, bullet, pie, box, defaultStyles, initStyles, - VShape, VCanvas_base, VCanvas_canvas, VCanvas_vml, pending, shapeCount = 0; - - /** - * Default configuration settings - */ - getDefaults = function () { - return { - // Settings common to most/all chart types - common: { - type: 'line', - lineColor: '#00f', - fillColor: '#cdf', - defaultPixelsPerValue: 3, - width: 'auto', - height: 'auto', - composite: false, - tagValuesAttribute: 'values', - tagOptionsPrefix: 'spark', - enableTagOptions: false, - enableHighlight: true, - highlightLighten: 1.4, - tooltipSkipNull: true, - tooltipPrefix: '', - tooltipSuffix: '', - disableHiddenCheck: false, - numberFormatter: false, - numberDigitGroupCount: 3, - numberDigitGroupSep: ',', - numberDecimalMark: '.', - disableTooltips: false, - disableInteraction: false - }, - // Defaults for line charts - line: { - spotColor: '#f80', - highlightSpotColor: '#5f5', - highlightLineColor: '#f22', - spotRadius: 1.5, - minSpotColor: '#f80', - maxSpotColor: '#f80', - lineWidth: 1, - normalRangeMin: undefined, - normalRangeMax: undefined, - normalRangeColor: '#ccc', - drawNormalOnTop: false, - chartRangeMin: undefined, - chartRangeMax: undefined, - chartRangeMinX: undefined, - chartRangeMaxX: undefined, - tooltipFormat: new SPFormat(' {{prefix}}{{y}}{{suffix}}') - }, - // Defaults for bar charts - bar: { - barColor: '#3366cc', - negBarColor: '#f44', - stackedBarColor: ['#3366cc', '#dc3912', '#ff9900', '#109618', '#66aa00', - '#dd4477', '#0099c6', '#990099'], - zeroColor: undefined, - nullColor: undefined, - zeroAxis: true, - barWidth: 4, - barSpacing: 1, - chartRangeMax: undefined, - chartRangeMin: undefined, - chartRangeClip: false, - colorMap: undefined, - tooltipFormat: new SPFormat(' {{prefix}}{{value}}{{suffix}}') - }, - // Defaults for tristate charts - tristate: { - barWidth: 4, - barSpacing: 1, - posBarColor: '#6f6', - negBarColor: '#f44', - zeroBarColor: '#999', - colorMap: {}, - tooltipFormat: new SPFormat(' {{value:map}}'), - tooltipValueLookups: { map: { '-1': 'Loss', '0': 'Draw', '1': 'Win' } } - }, - // Defaults for discrete charts - discrete: { - lineHeight: 'auto', - thresholdColor: undefined, - thresholdValue: 0, - chartRangeMax: undefined, - chartRangeMin: undefined, - chartRangeClip: false, - tooltipFormat: new SPFormat('{{prefix}}{{value}}{{suffix}}') - }, - // Defaults for bullet charts - bullet: { - targetColor: '#f33', - targetWidth: 3, // width of the target bar in pixels - performanceColor: '#33f', - rangeColors: ['#d3dafe', '#a8b6ff', '#7f94ff'], - base: undefined, // set this to a number to change the base start number - tooltipFormat: new SPFormat('{{fieldkey:fields}} - {{value}}'), - tooltipValueLookups: { fields: {r: 'Range', p: 'Performance', t: 'Target'} } - }, - // Defaults for pie charts - pie: { - offset: 0, - sliceColors: ['#3366cc', '#dc3912', '#ff9900', '#109618', '#66aa00', - '#dd4477', '#0099c6', '#990099'], - borderWidth: 0, - borderColor: '#000', - tooltipFormat: new SPFormat(' {{value}} ({{percent.1}}%)') - }, - // Defaults for box plots - box: { - raw: false, - boxLineColor: '#000', - boxFillColor: '#cdf', - whiskerColor: '#000', - outlierLineColor: '#333', - outlierFillColor: '#fff', - medianColor: '#f00', - showOutliers: true, - outlierIQR: 1.5, - spotRadius: 1.5, - target: undefined, - targetColor: '#4a2', - chartRangeMax: undefined, - chartRangeMin: undefined, - tooltipFormat: new SPFormat('{{field:fields}}: {{value}}'), - tooltipFormatFieldlistKey: 'field', - tooltipValueLookups: { fields: { lq: 'Lower Quartile', med: 'Median', - uq: 'Upper Quartile', lo: 'Left Outlier', ro: 'Right Outlier', - lw: 'Left Whisker', rw: 'Right Whisker'} } - } - }; - }; - - // You can have tooltips use a css class other than jqstooltip by specifying tooltipClassname - defaultStyles = '.jqstooltip { ' + - 'position: absolute;' + - 'left: 0px;' + - 'top: 0px;' + - 'visibility: hidden;' + - 'background: rgb(0, 0, 0) transparent;' + - 'background-color: rgba(0,0,0,0.6);' + - 'filter:progid:DXImageTransform.Microsoft.gradient(startColorstr=#99000000, endColorstr=#99000000);' + - '-ms-filter: "progid:DXImageTransform.Microsoft.gradient(startColorstr=#99000000, endColorstr=#99000000)";' + - 'color: white;' + - 'font: 10px arial, san serif;' + - 'text-align: left;' + - 'white-space: nowrap;' + - 'padding: 5px;' + - 'border: 1px solid white;' + - 'z-index: 10000;' + - '}' + - '.jqsfield { ' + - 'color: white;' + - 'font: 10px arial, san serif;' + - 'text-align: left;' + - '}'; - - /** - * Utilities - */ - - createClass = function (/* [baseclass, [mixin, ...]], definition */) { - var Class, args; - Class = function () { - this.init.apply(this, arguments); - }; - if (arguments.length > 1) { - if (arguments[0]) { - Class.prototype = $.extend(new arguments[0](), arguments[arguments.length - 1]); - Class._super = arguments[0].prototype; - } else { - Class.prototype = arguments[arguments.length - 1]; - } - if (arguments.length > 2) { - args = Array.prototype.slice.call(arguments, 1, -1); - args.unshift(Class.prototype); - $.extend.apply($, args); - } - } else { - Class.prototype = arguments[0]; - } - Class.prototype.cls = Class; - return Class; - }; - - /** - * Wraps a format string for tooltips - * {{x}} - * {{x.2} - * {{x:months}} - */ - $.SPFormatClass = SPFormat = createClass({ - fre: /\{\{([\w.]+?)(:(.+?))?\}\}/g, - precre: /(\w+)\.(\d+)/, - - init: function (format, fclass) { - this.format = format; - this.fclass = fclass; - }, - - render: function (fieldset, lookups, options) { - var self = this, - fields = fieldset, - match, token, lookupkey, fieldvalue, prec; - return this.format.replace(this.fre, function () { - var lookup; - token = arguments[1]; - lookupkey = arguments[3]; - match = self.precre.exec(token); - if (match) { - prec = match[2]; - token = match[1]; - } else { - prec = false; - } - fieldvalue = fields[token]; - if (fieldvalue === undefined) { - return ''; - } - if (lookupkey && lookups && lookups[lookupkey]) { - lookup = lookups[lookupkey]; - if (lookup.get) { // RangeMap - return lookups[lookupkey].get(fieldvalue) || fieldvalue; - } else { - return lookups[lookupkey][fieldvalue] || fieldvalue; - } - } - if (isNumber(fieldvalue)) { - if (options.get('numberFormatter')) { - fieldvalue = options.get('numberFormatter')(fieldvalue); - } else { - fieldvalue = formatNumber(fieldvalue, prec, - options.get('numberDigitGroupCount'), - options.get('numberDigitGroupSep'), - options.get('numberDecimalMark')); - } - } - return fieldvalue; - }); - } - }); - - // convience method to avoid needing the new operator - $.spformat = function(format, fclass) { - return new SPFormat(format, fclass); - }; - - clipval = function (val, min, max) { - if (val < min) { - return min; - } - if (val > max) { - return max; - } - return val; - }; - - quartile = function (values, q) { - var vl; - if (q === 2) { - vl = Math.floor(values.length / 2); - return values.length % 2 ? values[vl] : (values[vl-1] + values[vl]) / 2; - } else { - if (values.length % 2 ) { // odd - vl = (values.length * q + q) / 4; - return vl % 1 ? (values[Math.floor(vl)] + values[Math.floor(vl) - 1]) / 2 : values[vl-1]; - } else { //even - vl = (values.length * q + 2) / 4; - return vl % 1 ? (values[Math.floor(vl)] + values[Math.floor(vl) - 1]) / 2 : values[vl-1]; - - } - } - }; - - normalizeValue = function (val) { - var nf; - switch (val) { - case 'undefined': - val = undefined; - break; - case 'null': - val = null; - break; - case 'true': - val = true; - break; - case 'false': - val = false; - break; - default: - nf = parseFloat(val); - if (val == nf) { - val = nf; - } - } - return val; - }; - - normalizeValues = function (vals) { - var i, result = []; - for (i = vals.length; i--;) { - result[i] = normalizeValue(vals[i]); - } - return result; - }; - - remove = function (vals, filter) { - var i, vl, result = []; - for (i = 0, vl = vals.length; i < vl; i++) { - if (vals[i] !== filter) { - result.push(vals[i]); - } - } - return result; - }; - - isNumber = function (num) { - return !isNaN(parseFloat(num)) && isFinite(num); - }; - - formatNumber = function (num, prec, groupsize, groupsep, decsep) { - var p, i; - num = (prec === false ? parseFloat(num).toString() : num.toFixed(prec)).split(''); - p = (p = $.inArray('.', num)) < 0 ? num.length : p; - if (p < num.length) { - num[p] = decsep; - } - for (i = p - groupsize; i > 0; i -= groupsize) { - num.splice(i, 0, groupsep); - } - return num.join(''); - }; - - // determine if all values of an array match a value - // returns true if the array is empty - all = function (val, arr, ignoreNull) { - var i; - for (i = arr.length; i--; ) { - if (ignoreNull && arr[i] === null) continue; - if (arr[i] !== val) { - return false; - } - } - return true; - }; - - // sums the numeric values in an array, ignoring other values - sum = function (vals) { - var total = 0, i; - for (i = vals.length; i--;) { - total += typeof vals[i] === 'number' ? vals[i] : 0; - } - return total; - }; - - ensureArray = function (val) { - return $.isArray(val) ? val : [val]; - }; - - // http://paulirish.com/2008/bookmarklet-inject-new-css-rules/ - addCSS = function(css) { - var tag; - //if ('\v' == 'v') /* ie only */ { - if (document.createStyleSheet) { - document.createStyleSheet().cssText = css; - } else { - tag = document.createElement('style'); - tag.type = 'text/css'; - document.getElementsByTagName('head')[0].appendChild(tag); - tag[(typeof document.body.style.WebkitAppearance == 'string') /* webkit only */ ? 'innerText' : 'innerHTML'] = css; - } - }; - - // Provide a cross-browser interface to a few simple drawing primitives - $.fn.simpledraw = function (width, height, useExisting, interact) { - var target, mhandler; - if (useExisting && (target = this.data('_jqs_vcanvas'))) { - return target; - } - - if ($.fn.sparkline.canvas === false) { - // We've already determined that neither Canvas nor VML are available - return false; - - } else if ($.fn.sparkline.canvas === undefined) { - // No function defined yet -- need to see if we support Canvas or VML - var el = document.createElement('canvas'); - if (!!(el.getContext && el.getContext('2d'))) { - // Canvas is available - $.fn.sparkline.canvas = function(width, height, target, interact) { - return new VCanvas_canvas(width, height, target, interact); - }; - } else if (document.namespaces && !document.namespaces.v) { - // VML is available - document.namespaces.add('v', 'urn:schemas-microsoft-com:vml', '#default#VML'); - $.fn.sparkline.canvas = function(width, height, target, interact) { - return new VCanvas_vml(width, height, target); - }; - } else { - // Neither Canvas nor VML are available - $.fn.sparkline.canvas = false; - return false; - } - } - - if (width === undefined) { - width = $(this).innerWidth(); - } - if (height === undefined) { - height = $(this).innerHeight(); - } - - target = $.fn.sparkline.canvas(width, height, this, interact); - - mhandler = $(this).data('_jqs_mhandler'); - if (mhandler) { - mhandler.registerCanvas(target); - } - return target; - }; - - $.fn.cleardraw = function () { - var target = this.data('_jqs_vcanvas'); - if (target) { - target.reset(); - } - }; - - $.RangeMapClass = RangeMap = createClass({ - init: function (map) { - var key, range, rangelist = []; - for (key in map) { - if (map.hasOwnProperty(key) && typeof key === 'string' && key.indexOf(':') > -1) { - range = key.split(':'); - range[0] = range[0].length === 0 ? -Infinity : parseFloat(range[0]); - range[1] = range[1].length === 0 ? Infinity : parseFloat(range[1]); - range[2] = map[key]; - rangelist.push(range); - } - } - this.map = map; - this.rangelist = rangelist || false; - }, - - get: function (value) { - var rangelist = this.rangelist, - i, range, result; - if ((result = this.map[value]) !== undefined) { - return result; - } - if (rangelist) { - for (i = rangelist.length; i--;) { - range = rangelist[i]; - if (range[0] <= value && range[1] >= value) { - return range[2]; - } - } - } - return undefined; - } - }); - - // Convenience function - $.range_map = function(map) { - return new RangeMap(map); - }; - - MouseHandler = createClass({ - init: function (el, options) { - var $el = $(el); - this.$el = $el; - this.options = options; - this.currentPageX = 0; - this.currentPageY = 0; - this.el = el; - this.splist = []; - this.tooltip = null; - this.over = false; - this.displayTooltips = !options.get('disableTooltips'); - this.highlightEnabled = !options.get('disableHighlight'); - }, - - registerSparkline: function (sp) { - this.splist.push(sp); - if (this.over) { - this.updateDisplay(); - } - }, - - registerCanvas: function (canvas) { - var $canvas = $(canvas.canvas); - this.canvas = canvas; - this.$canvas = $canvas; - $canvas.mouseenter($.proxy(this.mouseenter, this)); - $canvas.mouseleave($.proxy(this.mouseleave, this)); - $canvas.click($.proxy(this.mouseclick, this)); - }, - - reset: function (removeTooltip) { - this.splist = []; - if (this.tooltip && removeTooltip) { - this.tooltip.remove(); - this.tooltip = undefined; - } - }, - - mouseclick: function (e) { - var clickEvent = $.Event('sparklineClick'); - clickEvent.originalEvent = e; - clickEvent.sparklines = this.splist; - this.$el.trigger(clickEvent); - }, - - mouseenter: function (e) { - $(document.body).unbind('mousemove.jqs'); - $(document.body).bind('mousemove.jqs', $.proxy(this.mousemove, this)); - this.over = true; - this.currentPageX = e.pageX; - this.currentPageY = e.pageY; - this.currentEl = e.target; - if (!this.tooltip && this.displayTooltips) { - this.tooltip = new Tooltip(this.options); - this.tooltip.updatePosition(e.pageX, e.pageY); - } - this.updateDisplay(); - }, - - mouseleave: function () { - $(document.body).unbind('mousemove.jqs'); - var splist = this.splist, - spcount = splist.length, - needsRefresh = false, - sp, i; - this.over = false; - this.currentEl = null; - - if (this.tooltip) { - this.tooltip.remove(); - this.tooltip = null; - } - - for (i = 0; i < spcount; i++) { - sp = splist[i]; - if (sp.clearRegionHighlight()) { - needsRefresh = true; - } - } - - if (needsRefresh) { - this.canvas.render(); - } - }, - - mousemove: function (e) { - this.currentPageX = e.pageX; - this.currentPageY = e.pageY; - this.currentEl = e.target; - if (this.tooltip) { - this.tooltip.updatePosition(e.pageX, e.pageY); - } - this.updateDisplay(); - }, - - updateDisplay: function () { - var splist = this.splist, - spcount = splist.length, - needsRefresh = false, - offset = this.$canvas.offset(), - localX = this.currentPageX - offset.left, - localY = this.currentPageY - offset.top, - tooltiphtml, sp, i, result, changeEvent; - if (!this.over) { - return; - } - for (i = 0; i < spcount; i++) { - sp = splist[i]; - result = sp.setRegionHighlight(this.currentEl, localX, localY); - if (result) { - needsRefresh = true; - } - } - if (needsRefresh) { - changeEvent = $.Event('sparklineRegionChange'); - changeEvent.sparklines = this.splist; - this.$el.trigger(changeEvent); - if (this.tooltip) { - tooltiphtml = ''; - for (i = 0; i < spcount; i++) { - sp = splist[i]; - tooltiphtml += sp.getCurrentRegionTooltip(); - } - this.tooltip.setContent(tooltiphtml); - } - if (!this.disableHighlight) { - this.canvas.render(); - } - } - if (result === null) { - this.mouseleave(); - } - } - }); - - - Tooltip = createClass({ - sizeStyle: 'position: static !important;' + - 'display: block !important;' + - 'visibility: hidden !important;' + - 'float: left !important;', - - init: function (options) { - var tooltipClassname = options.get('tooltipClassname', 'jqstooltip'), - sizetipStyle = this.sizeStyle, - offset; - this.container = options.get('tooltipContainer') || document.body; - this.tooltipOffsetX = options.get('tooltipOffsetX', 10); - this.tooltipOffsetY = options.get('tooltipOffsetY', 12); - // remove any previous lingering tooltip - $('#jqssizetip').remove(); - $('#jqstooltip').remove(); - this.sizetip = $('
', { - id: 'jqssizetip', - style: sizetipStyle, - 'class': tooltipClassname - }); - this.tooltip = $('
', { - id: 'jqstooltip', - 'class': tooltipClassname - }).appendTo(this.container); - // account for the container's location - offset = this.tooltip.offset(); - this.offsetLeft = offset.left; - this.offsetTop = offset.top; - this.hidden = true; - $(window).unbind('resize.jqs scroll.jqs'); - $(window).bind('resize.jqs scroll.jqs', $.proxy(this.updateWindowDims, this)); - this.updateWindowDims(); - }, - - updateWindowDims: function () { - this.scrollTop = $(window).scrollTop(); - this.scrollLeft = $(window).scrollLeft(); - this.scrollRight = this.scrollLeft + $(window).width(); - this.updatePosition(); - }, - - getSize: function (content) { - this.sizetip.html(content).appendTo(this.container); - this.width = this.sizetip.width() + 1; - this.height = this.sizetip.height(); - this.sizetip.remove(); - }, - - setContent: function (content) { - if (!content) { - this.tooltip.css('visibility', 'hidden'); - this.hidden = true; - return; - } - this.getSize(content); - this.tooltip.html(content) - .css({ - 'width': this.width, - 'height': this.height, - 'visibility': 'visible' - }); - if (this.hidden) { - this.hidden = false; - this.updatePosition(); - } - }, - - updatePosition: function (x, y) { - if (x === undefined) { - if (this.mousex === undefined) { - return; - } - x = this.mousex - this.offsetLeft; - y = this.mousey - this.offsetTop; - - } else { - this.mousex = x = x - this.offsetLeft; - this.mousey = y = y - this.offsetTop; - } - if (!this.height || !this.width || this.hidden) { - return; - } - - y -= this.height + this.tooltipOffsetY; - x += this.tooltipOffsetX; - - if (y < this.scrollTop) { - y = this.scrollTop; - } - if (x < this.scrollLeft) { - x = this.scrollLeft; - } else if (x + this.width > this.scrollRight) { - x = this.scrollRight - this.width; - } - - this.tooltip.css({ - 'left': x, - 'top': y - }); - }, - - remove: function () { - this.tooltip.remove(); - this.sizetip.remove(); - this.sizetip = this.tooltip = undefined; - $(window).unbind('resize.jqs scroll.jqs'); - } - }); - - initStyles = function() { - addCSS(defaultStyles); - }; - - $(initStyles); - - pending = []; - $.fn.sparkline = function (userValues, userOptions) { - return this.each(function () { - var options = new $.fn.sparkline.options(this, userOptions), - $this = $(this), - render, i; - render = function () { - var values, width, height, tmp, mhandler, sp, vals; - if (userValues === 'html' || userValues === undefined) { - vals = this.getAttribute(options.get('tagValuesAttribute')); - if (vals === undefined || vals === null) { - vals = $this.html(); - } - values = vals.replace(/(^\s*\s*$)|\s+/g, '').split(','); - } else { - values = userValues; - } - - width = options.get('width') === 'auto' ? values.length * options.get('defaultPixelsPerValue') : options.get('width'); - if (options.get('height') === 'auto') { - if (!options.get('composite') || !$.data(this, '_jqs_vcanvas')) { - // must be a better way to get the line height - tmp = document.createElement('span'); - tmp.innerHTML = 'a'; - $this.html(tmp); - height = $(tmp).innerHeight() || $(tmp).height(); - $(tmp).remove(); - tmp = null; - } - } else { - height = options.get('height'); - } - - if (!options.get('disableInteraction')) { - mhandler = $.data(this, '_jqs_mhandler'); - if (!mhandler) { - mhandler = new MouseHandler(this, options); - $.data(this, '_jqs_mhandler', mhandler); - } else if (!options.get('composite')) { - mhandler.reset(); - } - } else { - mhandler = false; - } - - if (options.get('composite') && !$.data(this, '_jqs_vcanvas')) { - if (!$.data(this, '_jqs_errnotify')) { - alert('Attempted to attach a composite sparkline to an element with no existing sparkline'); - $.data(this, '_jqs_errnotify', true); - } - return; - } - - sp = new $.fn.sparkline[options.get('type')](this, values, options, width, height); - - sp.render(); - - if (mhandler) { - mhandler.registerSparkline(sp); - } - }; - if (($(this).html() && !options.get('disableHiddenCheck') && $(this).is(':hidden')) || !$(this).parents('body').length) { - if (!options.get('composite') && $.data(this, '_jqs_pending')) { - // remove any existing references to the element - for (i = pending.length; i; i--) { - if (pending[i - 1][0] == this) { - pending.splice(i - 1, 1); - } - } - } - pending.push([this, render]); - $.data(this, '_jqs_pending', true); - } else { - render.call(this); - } - }); - }; - - $.fn.sparkline.defaults = getDefaults(); - - - $.sparkline_display_visible = function () { - var el, i, pl; - var done = []; - for (i = 0, pl = pending.length; i < pl; i++) { - el = pending[i][0]; - if ($(el).is(':visible') && !$(el).parents().is(':hidden')) { - pending[i][1].call(el); - $.data(pending[i][0], '_jqs_pending', false); - done.push(i); - } else if (!$(el).closest('html').length && !$.data(el, '_jqs_pending')) { - // element has been inserted and removed from the DOM - // If it was not yet inserted into the dom then the .data request - // will return true. - // removing from the dom causes the data to be removed. - $.data(pending[i][0], '_jqs_pending', false); - done.push(i); - } - } - for (i = done.length; i; i--) { - pending.splice(done[i - 1], 1); - } - }; - - - /** - * User option handler - */ - $.fn.sparkline.options = createClass({ - init: function (tag, userOptions) { - var extendedOptions, defaults, base, tagOptionType; - this.userOptions = userOptions = userOptions || {}; - this.tag = tag; - this.tagValCache = {}; - defaults = $.fn.sparkline.defaults; - base = defaults.common; - this.tagOptionsPrefix = userOptions.enableTagOptions && (userOptions.tagOptionsPrefix || base.tagOptionsPrefix); - - tagOptionType = this.getTagSetting('type'); - if (tagOptionType === UNSET_OPTION) { - extendedOptions = defaults[userOptions.type || base.type]; - } else { - extendedOptions = defaults[tagOptionType]; - } - this.mergedOptions = $.extend({}, base, extendedOptions, userOptions); - }, - - - getTagSetting: function (key) { - var prefix = this.tagOptionsPrefix, - val, i, pairs, keyval; - if (prefix === false || prefix === undefined) { - return UNSET_OPTION; - } - if (this.tagValCache.hasOwnProperty(key)) { - val = this.tagValCache.key; - } else { - val = this.tag.getAttribute(prefix + key); - if (val === undefined || val === null) { - val = UNSET_OPTION; - } else if (val.substr(0, 1) === '[') { - val = val.substr(1, val.length - 2).split(','); - for (i = val.length; i--;) { - val[i] = normalizeValue(val[i].replace(/(^\s*)|(\s*$)/g, '')); - } - } else if (val.substr(0, 1) === '{') { - pairs = val.substr(1, val.length - 2).split(','); - val = {}; - for (i = pairs.length; i--;) { - keyval = pairs[i].split(':', 2); - val[keyval[0].replace(/(^\s*)|(\s*$)/g, '')] = normalizeValue(keyval[1].replace(/(^\s*)|(\s*$)/g, '')); - } - } else { - val = normalizeValue(val); - } - this.tagValCache.key = val; - } - return val; - }, - - get: function (key, defaultval) { - var tagOption = this.getTagSetting(key), - result; - if (tagOption !== UNSET_OPTION) { - return tagOption; - } - return (result = this.mergedOptions[key]) === undefined ? defaultval : result; - } - }); - - - $.fn.sparkline._base = createClass({ - disabled: false, - - init: function (el, values, options, width, height) { - this.el = el; - this.$el = $(el); - this.values = values; - this.options = options; - this.width = width; - this.height = height; - this.currentRegion = undefined; - }, - - /** - * Setup the canvas - */ - initTarget: function () { - var interactive = !this.options.get('disableInteraction'); - if (!(this.target = this.$el.simpledraw(this.width, this.height, this.options.get('composite'), interactive))) { - this.disabled = true; - } else { - this.canvasWidth = this.target.pixelWidth; - this.canvasHeight = this.target.pixelHeight; - } - }, - - /** - * Actually render the chart to the canvas - */ - render: function () { - if (this.disabled) { - this.el.innerHTML = ''; - return false; - } - return true; - }, - - /** - * Return a region id for a given x/y co-ordinate - */ - getRegion: function (x, y) { - }, - - /** - * Highlight an item based on the moused-over x,y co-ordinate - */ - setRegionHighlight: function (el, x, y) { - var currentRegion = this.currentRegion, - highlightEnabled = !this.options.get('disableHighlight'), - newRegion; - if (x > this.canvasWidth || y > this.canvasHeight || x < 0 || y < 0) { - return null; - } - newRegion = this.getRegion(el, x, y); - if (currentRegion !== newRegion) { - if (currentRegion !== undefined && highlightEnabled) { - this.removeHighlight(); - } - this.currentRegion = newRegion; - if (newRegion !== undefined && highlightEnabled) { - this.renderHighlight(); - } - return true; - } - return false; - }, - - /** - * Reset any currently highlighted item - */ - clearRegionHighlight: function () { - if (this.currentRegion !== undefined) { - this.removeHighlight(); - this.currentRegion = undefined; - return true; - } - return false; - }, - - renderHighlight: function () { - this.changeHighlight(true); - }, - - removeHighlight: function () { - this.changeHighlight(false); - }, - - changeHighlight: function (highlight) {}, - - /** - * Fetch the HTML to display as a tooltip - */ - getCurrentRegionTooltip: function () { - var options = this.options, - header = '', - entries = [], - fields, formats, formatlen, fclass, text, i, - showFields, showFieldsKey, newFields, fv, - formatter, format, fieldlen, j; - if (this.currentRegion === undefined) { - return ''; - } - fields = this.getCurrentRegionFields(); - formatter = options.get('tooltipFormatter'); - if (formatter) { - return formatter(this, options, fields); - } - if (options.get('tooltipChartTitle')) { - header += '
' + options.get('tooltipChartTitle') + '
\n'; - } - formats = this.options.get('tooltipFormat'); - if (!formats) { - return ''; - } - if (!$.isArray(formats)) { - formats = [formats]; - } - if (!$.isArray(fields)) { - fields = [fields]; - } - showFields = this.options.get('tooltipFormatFieldlist'); - showFieldsKey = this.options.get('tooltipFormatFieldlistKey'); - if (showFields && showFieldsKey) { - // user-selected ordering of fields - newFields = []; - for (i = fields.length; i--;) { - fv = fields[i][showFieldsKey]; - if ((j = $.inArray(fv, showFields)) != -1) { - newFields[j] = fields[i]; - } - } - fields = newFields; - } - formatlen = formats.length; - fieldlen = fields.length; - for (i = 0; i < formatlen; i++) { - format = formats[i]; - if (typeof format === 'string') { - format = new SPFormat(format); - } - fclass = format.fclass || 'jqsfield'; - for (j = 0; j < fieldlen; j++) { - if (!fields[j].isNull || !options.get('tooltipSkipNull')) { - $.extend(fields[j], { - prefix: options.get('tooltipPrefix'), - suffix: options.get('tooltipSuffix') - }); - text = format.render(fields[j], options.get('tooltipValueLookups'), options); - entries.push('
' + text + '
'); - } - } - } - if (entries.length) { - return header + entries.join('\n'); - } - return ''; - }, - - getCurrentRegionFields: function () {}, - - calcHighlightColor: function (color, options) { - var highlightColor = options.get('highlightColor'), - lighten = options.get('highlightLighten'), - parse, mult, rgbnew, i; - if (highlightColor) { - return highlightColor; - } - if (lighten) { - // extract RGB values - parse = /^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(color) || /^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(color); - if (parse) { - rgbnew = []; - mult = color.length === 4 ? 16 : 1; - for (i = 0; i < 3; i++) { - rgbnew[i] = clipval(Math.round(parseInt(parse[i + 1], 16) * mult * lighten), 0, 255); - } - return 'rgb(' + rgbnew.join(',') + ')'; - } - - } - return color; - } - - }); - - barHighlightMixin = { - changeHighlight: function (highlight) { - var currentRegion = this.currentRegion, - target = this.target, - shapeids = this.regionShapes[currentRegion], - newShapes; - // will be null if the region value was null - if (shapeids) { - newShapes = this.renderRegion(currentRegion, highlight); - if ($.isArray(newShapes) || $.isArray(shapeids)) { - target.replaceWithShapes(shapeids, newShapes); - this.regionShapes[currentRegion] = $.map(newShapes, function (newShape) { - return newShape.id; - }); - } else { - target.replaceWithShape(shapeids, newShapes); - this.regionShapes[currentRegion] = newShapes.id; - } - } - }, - - render: function () { - var values = this.values, - target = this.target, - regionShapes = this.regionShapes, - shapes, ids, i, j; - - if (!this.cls._super.render.call(this)) { - return; - } - for (i = values.length; i--;) { - shapes = this.renderRegion(i); - if (shapes) { - if ($.isArray(shapes)) { - ids = []; - for (j = shapes.length; j--;) { - shapes[j].append(); - ids.push(shapes[j].id); - } - regionShapes[i] = ids; - } else { - shapes.append(); - regionShapes[i] = shapes.id; // store just the shapeid - } - } else { - // null value - regionShapes[i] = null; - } - } - target.render(); - } - }; - - /** - * Line charts - */ - $.fn.sparkline.line = line = createClass($.fn.sparkline._base, { - type: 'line', - - init: function (el, values, options, width, height) { - line._super.init.call(this, el, values, options, width, height); - this.vertices = []; - this.regionMap = []; - this.xvalues = []; - this.yvalues = []; - this.yminmax = []; - this.hightlightSpotId = null; - this.lastShapeId = null; - this.initTarget(); - }, - - getRegion: function (el, x, y) { - var i, - regionMap = this.regionMap; // maps regions to value positions - for (i = regionMap.length; i--;) { - if (regionMap[i] !== null && x >= regionMap[i][0] && x <= regionMap[i][1]) { - return regionMap[i][2]; - } - } - return undefined; - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion; - return { - isNull: this.yvalues[currentRegion] === null, - x: this.xvalues[currentRegion], - y: this.yvalues[currentRegion], - color: this.options.get('lineColor'), - fillColor: this.options.get('fillColor'), - offset: currentRegion - }; - }, - - renderHighlight: function () { - var currentRegion = this.currentRegion, - target = this.target, - vertex = this.vertices[currentRegion], - options = this.options, - spotRadius = options.get('spotRadius'), - highlightSpotColor = options.get('highlightSpotColor'), - highlightLineColor = options.get('highlightLineColor'), - highlightSpot, highlightLine; - - if (!vertex) { - return; - } - if (spotRadius && highlightSpotColor) { - highlightSpot = target.drawCircle(vertex[0], vertex[1], - spotRadius, undefined, highlightSpotColor); - this.highlightSpotId = highlightSpot.id; - target.insertAfterShape(this.lastShapeId, highlightSpot); - } - if (highlightLineColor) { - highlightLine = target.drawLine(vertex[0], this.canvasTop, vertex[0], - this.canvasTop + this.canvasHeight, highlightLineColor); - this.highlightLineId = highlightLine.id; - target.insertAfterShape(this.lastShapeId, highlightLine); - } - }, - - removeHighlight: function () { - var target = this.target; - if (this.highlightSpotId) { - target.removeShapeId(this.highlightSpotId); - this.highlightSpotId = null; - } - if (this.highlightLineId) { - target.removeShapeId(this.highlightLineId); - this.highlightLineId = null; - } - }, - - scanValues: function () { - var values = this.values, - valcount = values.length, - xvalues = this.xvalues, - yvalues = this.yvalues, - yminmax = this.yminmax, - i, val, isStr, isArray, sp; - for (i = 0; i < valcount; i++) { - val = values[i]; - isStr = typeof(values[i]) === 'string'; - isArray = typeof(values[i]) === 'object' && values[i] instanceof Array; - sp = isStr && values[i].split(':'); - if (isStr && sp.length === 2) { // x:y - xvalues.push(Number(sp[0])); - yvalues.push(Number(sp[1])); - yminmax.push(Number(sp[1])); - } else if (isArray) { - xvalues.push(val[0]); - yvalues.push(val[1]); - yminmax.push(val[1]); - } else { - xvalues.push(i); - if (values[i] === null || values[i] === 'null') { - yvalues.push(null); - } else { - yvalues.push(Number(val)); - yminmax.push(Number(val)); - } - } - } - if (this.options.get('xvalues')) { - xvalues = this.options.get('xvalues'); - } - - this.maxy = this.maxyorg = Math.max.apply(Math, yminmax); - this.miny = this.minyorg = Math.min.apply(Math, yminmax); - - this.maxx = Math.max.apply(Math, xvalues); - this.minx = Math.min.apply(Math, xvalues); - - this.xvalues = xvalues; - this.yvalues = yvalues; - this.yminmax = yminmax; - - }, - - processRangeOptions: function () { - var options = this.options, - normalRangeMin = options.get('normalRangeMin'), - normalRangeMax = options.get('normalRangeMax'); - - if (normalRangeMin !== undefined) { - if (normalRangeMin < this.miny) { - this.miny = normalRangeMin; - } - if (normalRangeMax > this.maxy) { - this.maxy = normalRangeMax; - } - } - if (options.get('chartRangeMin') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMin') < this.miny)) { - this.miny = options.get('chartRangeMin'); - } - if (options.get('chartRangeMax') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMax') > this.maxy)) { - this.maxy = options.get('chartRangeMax'); - } - if (options.get('chartRangeMinX') !== undefined && (options.get('chartRangeClipX') || options.get('chartRangeMinX') < this.minx)) { - this.minx = options.get('chartRangeMinX'); - } - if (options.get('chartRangeMaxX') !== undefined && (options.get('chartRangeClipX') || options.get('chartRangeMaxX') > this.maxx)) { - this.maxx = options.get('chartRangeMaxX'); - } - - }, - - drawNormalRange: function (canvasLeft, canvasTop, canvasHeight, canvasWidth, rangey) { - var normalRangeMin = this.options.get('normalRangeMin'), - normalRangeMax = this.options.get('normalRangeMax'), - ytop = canvasTop + Math.round(canvasHeight - (canvasHeight * ((normalRangeMax - this.miny) / rangey))), - height = Math.round((canvasHeight * (normalRangeMax - normalRangeMin)) / rangey); - this.target.drawRect(canvasLeft, ytop, canvasWidth, height, undefined, this.options.get('normalRangeColor')).append(); - }, - - render: function () { - var options = this.options, - target = this.target, - canvasWidth = this.canvasWidth, - canvasHeight = this.canvasHeight, - vertices = this.vertices, - spotRadius = options.get('spotRadius'), - regionMap = this.regionMap, - rangex, rangey, yvallast, - canvasTop, canvasLeft, - vertex, path, paths, x, y, xnext, xpos, xposnext, - last, next, yvalcount, lineShapes, fillShapes, plen, - valueSpots, hlSpotsEnabled, color, xvalues, yvalues, i; - - if (!line._super.render.call(this)) { - return; - } - - this.scanValues(); - this.processRangeOptions(); - - xvalues = this.xvalues; - yvalues = this.yvalues; - - if (!this.yminmax.length || this.yvalues.length < 2) { - // empty or all null valuess - return; - } - - canvasTop = canvasLeft = 0; - - rangex = this.maxx - this.minx === 0 ? 1 : this.maxx - this.minx; - rangey = this.maxy - this.miny === 0 ? 1 : this.maxy - this.miny; - yvallast = this.yvalues.length - 1; - - if (spotRadius && (canvasWidth < (spotRadius * 4) || canvasHeight < (spotRadius * 4))) { - spotRadius = 0; - } - if (spotRadius) { - // adjust the canvas size as required so that spots will fit - hlSpotsEnabled = options.get('highlightSpotColor') && !options.get('disableInteraction'); - if (hlSpotsEnabled || options.get('minSpotColor') || (options.get('spotColor') && yvalues[yvallast] === this.miny)) { - canvasHeight -= Math.ceil(spotRadius); - } - if (hlSpotsEnabled || options.get('maxSpotColor') || (options.get('spotColor') && yvalues[yvallast] === this.maxy)) { - canvasHeight -= Math.ceil(spotRadius); - canvasTop += Math.ceil(spotRadius); - } - if (hlSpotsEnabled || - ((options.get('minSpotColor') || options.get('maxSpotColor')) && (yvalues[0] === this.miny || yvalues[0] === this.maxy))) { - canvasLeft += Math.ceil(spotRadius); - canvasWidth -= Math.ceil(spotRadius); - } - if (hlSpotsEnabled || options.get('spotColor') || - (options.get('minSpotColor') || options.get('maxSpotColor') && - (yvalues[yvallast] === this.miny || yvalues[yvallast] === this.maxy))) { - canvasWidth -= Math.ceil(spotRadius); - } - } - - - canvasHeight--; - - if (options.get('normalRangeMin') !== undefined && !options.get('drawNormalOnTop')) { - this.drawNormalRange(canvasLeft, canvasTop, canvasHeight, canvasWidth, rangey); - } - - path = []; - paths = [path]; - last = next = null; - yvalcount = yvalues.length; - for (i = 0; i < yvalcount; i++) { - x = xvalues[i]; - xnext = xvalues[i + 1]; - y = yvalues[i]; - xpos = canvasLeft + Math.round((x - this.minx) * (canvasWidth / rangex)); - xposnext = i < yvalcount - 1 ? canvasLeft + Math.round((xnext - this.minx) * (canvasWidth / rangex)) : canvasWidth; - next = xpos + ((xposnext - xpos) / 2); - regionMap[i] = [last || 0, next, i]; - last = next; - if (y === null) { - if (i) { - if (yvalues[i - 1] !== null) { - path = []; - paths.push(path); - } - vertices.push(null); - } - } else { - if (y < this.miny) { - y = this.miny; - } - if (y > this.maxy) { - y = this.maxy; - } - if (!path.length) { - // previous value was null - path.push([xpos, canvasTop + canvasHeight]); - } - vertex = [xpos, canvasTop + Math.round(canvasHeight - (canvasHeight * ((y - this.miny) / rangey)))]; - path.push(vertex); - vertices.push(vertex); - } - } - - lineShapes = []; - fillShapes = []; - plen = paths.length; - for (i = 0; i < plen; i++) { - path = paths[i]; - if (path.length) { - if (options.get('fillColor')) { - path.push([path[path.length - 1][0], (canvasTop + canvasHeight)]); - fillShapes.push(path.slice(0)); - path.pop(); - } - // if there's only a single point in this path, then we want to display it - // as a vertical line which means we keep path[0] as is - if (path.length > 2) { - // else we want the first value - path[0] = [path[0][0], path[1][1]]; - } - lineShapes.push(path); - } - } - - // draw the fill first, then optionally the normal range, then the line on top of that - plen = fillShapes.length; - for (i = 0; i < plen; i++) { - target.drawShape(fillShapes[i], - options.get('fillColor'), options.get('fillColor')).append(); - } - - if (options.get('normalRangeMin') !== undefined && options.get('drawNormalOnTop')) { - this.drawNormalRange(canvasLeft, canvasTop, canvasHeight, canvasWidth, rangey); - } - - plen = lineShapes.length; - for (i = 0; i < plen; i++) { - target.drawShape(lineShapes[i], options.get('lineColor'), undefined, - options.get('lineWidth')).append(); - } - - if (spotRadius && options.get('valueSpots')) { - valueSpots = options.get('valueSpots'); - if (valueSpots.get === undefined) { - valueSpots = new RangeMap(valueSpots); - } - for (i = 0; i < yvalcount; i++) { - color = valueSpots.get(yvalues[i]); - if (color) { - target.drawCircle(canvasLeft + Math.round((xvalues[i] - this.minx) * (canvasWidth / rangex)), - canvasTop + Math.round(canvasHeight - (canvasHeight * ((yvalues[i] - this.miny) / rangey))), - spotRadius, undefined, - color).append(); - } - } - - } - if (spotRadius && options.get('spotColor') && yvalues[yvallast] !== null) { - target.drawCircle(canvasLeft + Math.round((xvalues[xvalues.length - 1] - this.minx) * (canvasWidth / rangex)), - canvasTop + Math.round(canvasHeight - (canvasHeight * ((yvalues[yvallast] - this.miny) / rangey))), - spotRadius, undefined, - options.get('spotColor')).append(); - } - if (this.maxy !== this.minyorg) { - if (spotRadius && options.get('minSpotColor')) { - x = xvalues[$.inArray(this.minyorg, yvalues)]; - target.drawCircle(canvasLeft + Math.round((x - this.minx) * (canvasWidth / rangex)), - canvasTop + Math.round(canvasHeight - (canvasHeight * ((this.minyorg - this.miny) / rangey))), - spotRadius, undefined, - options.get('minSpotColor')).append(); - } - if (spotRadius && options.get('maxSpotColor')) { - x = xvalues[$.inArray(this.maxyorg, yvalues)]; - target.drawCircle(canvasLeft + Math.round((x - this.minx) * (canvasWidth / rangex)), - canvasTop + Math.round(canvasHeight - (canvasHeight * ((this.maxyorg - this.miny) / rangey))), - spotRadius, undefined, - options.get('maxSpotColor')).append(); - } - } - - this.lastShapeId = target.getLastShapeId(); - this.canvasTop = canvasTop; - target.render(); - } - }); - - /** - * Bar charts - */ - $.fn.sparkline.bar = bar = createClass($.fn.sparkline._base, barHighlightMixin, { - type: 'bar', - - init: function (el, values, options, width, height) { - var barWidth = parseInt(options.get('barWidth'), 10), - barSpacing = parseInt(options.get('barSpacing'), 10), - chartRangeMin = options.get('chartRangeMin'), - chartRangeMax = options.get('chartRangeMax'), - chartRangeClip = options.get('chartRangeClip'), - stackMin = Infinity, - stackMax = -Infinity, - isStackString, groupMin, groupMax, stackRanges, - numValues, i, vlen, range, zeroAxis, xaxisOffset, min, max, clipMin, clipMax, - stacked, vlist, j, slen, svals, val, yoffset, yMaxCalc, canvasHeightEf; - bar._super.init.call(this, el, values, options, width, height); - - // scan values to determine whether to stack bars - for (i = 0, vlen = values.length; i < vlen; i++) { - val = values[i]; - isStackString = typeof(val) === 'string' && val.indexOf(':') > -1; - if (isStackString || $.isArray(val)) { - stacked = true; - if (isStackString) { - val = values[i] = normalizeValues(val.split(':')); - } - val = remove(val, null); // min/max will treat null as zero - groupMin = Math.min.apply(Math, val); - groupMax = Math.max.apply(Math, val); - if (groupMin < stackMin) { - stackMin = groupMin; - } - if (groupMax > stackMax) { - stackMax = groupMax; - } - } - } - - this.stacked = stacked; - this.regionShapes = {}; - this.barWidth = barWidth; - this.barSpacing = barSpacing; - this.totalBarWidth = barWidth + barSpacing; - this.width = width = (values.length * barWidth) + ((values.length - 1) * barSpacing); - - this.initTarget(); - - if (chartRangeClip) { - clipMin = chartRangeMin === undefined ? -Infinity : chartRangeMin; - clipMax = chartRangeMax === undefined ? Infinity : chartRangeMax; - } - - numValues = []; - stackRanges = stacked ? [] : numValues; - var stackTotals = []; - var stackRangesNeg = []; - for (i = 0, vlen = values.length; i < vlen; i++) { - if (stacked) { - vlist = values[i]; - values[i] = svals = []; - stackTotals[i] = 0; - stackRanges[i] = stackRangesNeg[i] = 0; - for (j = 0, slen = vlist.length; j < slen; j++) { - val = svals[j] = chartRangeClip ? clipval(vlist[j], clipMin, clipMax) : vlist[j]; - if (val !== null) { - if (val > 0) { - stackTotals[i] += val; - } - if (stackMin < 0 && stackMax > 0) { - if (val < 0) { - stackRangesNeg[i] += Math.abs(val); - } else { - stackRanges[i] += val; - } - } else { - stackRanges[i] += Math.abs(val - (val < 0 ? stackMax : stackMin)); - } - numValues.push(val); - } - } - } else { - val = chartRangeClip ? clipval(values[i], clipMin, clipMax) : values[i]; - val = values[i] = normalizeValue(val); - if (val !== null) { - numValues.push(val); - } - } - } - this.max = max = Math.max.apply(Math, numValues); - this.min = min = Math.min.apply(Math, numValues); - this.stackMax = stackMax = stacked ? Math.max.apply(Math, stackTotals) : max; - this.stackMin = stackMin = stacked ? Math.min.apply(Math, numValues) : min; - - if (options.get('chartRangeMin') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMin') < min)) { - min = options.get('chartRangeMin'); - } - if (options.get('chartRangeMax') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMax') > max)) { - max = options.get('chartRangeMax'); - } - - this.zeroAxis = zeroAxis = options.get('zeroAxis', true); - if (min <= 0 && max >= 0 && zeroAxis) { - xaxisOffset = 0; - } else if (zeroAxis == false) { - xaxisOffset = min; - } else if (min > 0) { - xaxisOffset = min; - } else { - xaxisOffset = max; - } - this.xaxisOffset = xaxisOffset; - - range = stacked ? (Math.max.apply(Math, stackRanges) + Math.max.apply(Math, stackRangesNeg)) : max - min; - - // as we plot zero/min values a single pixel line, we add a pixel to all other - // values - Reduce the effective canvas size to suit - this.canvasHeightEf = (zeroAxis && min < 0) ? this.canvasHeight - 2 : this.canvasHeight - 1; - - if (min < xaxisOffset) { - yMaxCalc = (stacked && max >= 0) ? stackMax : max; - yoffset = (yMaxCalc - xaxisOffset) / range * this.canvasHeight; - if (yoffset !== Math.ceil(yoffset)) { - this.canvasHeightEf -= 2; - yoffset = Math.ceil(yoffset); - } - } else { - yoffset = this.canvasHeight; - } - this.yoffset = yoffset; - - if ($.isArray(options.get('colorMap'))) { - this.colorMapByIndex = options.get('colorMap'); - this.colorMapByValue = null; - } else { - this.colorMapByIndex = null; - this.colorMapByValue = options.get('colorMap'); - if (this.colorMapByValue && this.colorMapByValue.get === undefined) { - this.colorMapByValue = new RangeMap(this.colorMapByValue); - } - } - - this.range = range; - }, - - getRegion: function (el, x, y) { - var result = Math.floor(x / this.totalBarWidth); - return (result < 0 || result >= this.values.length) ? undefined : result; - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion, - values = ensureArray(this.values[currentRegion]), - result = [], - value, i; - for (i = values.length; i--;) { - value = values[i]; - result.push({ - isNull: value === null, - value: value, - color: this.calcColor(i, value, currentRegion), - offset: currentRegion - }); - } - return result; - }, - - calcColor: function (stacknum, value, valuenum) { - var colorMapByIndex = this.colorMapByIndex, - colorMapByValue = this.colorMapByValue, - options = this.options, - color, newColor; - if (this.stacked) { - color = options.get('stackedBarColor'); - } else { - color = (value < 0) ? options.get('negBarColor') : options.get('barColor'); - } - if (value === 0 && options.get('zeroColor') !== undefined) { - color = options.get('zeroColor'); - } - if (colorMapByValue && (newColor = colorMapByValue.get(value))) { - color = newColor; - } else if (colorMapByIndex && colorMapByIndex.length > valuenum) { - color = colorMapByIndex[valuenum]; - } - return $.isArray(color) ? color[stacknum % color.length] : color; - }, - - /** - * Render bar(s) for a region - */ - renderRegion: function (valuenum, highlight) { - var vals = this.values[valuenum], - options = this.options, - xaxisOffset = this.xaxisOffset, - result = [], - range = this.range, - stacked = this.stacked, - target = this.target, - x = valuenum * this.totalBarWidth, - canvasHeightEf = this.canvasHeightEf, - yoffset = this.yoffset, - y, height, color, isNull, yoffsetNeg, i, valcount, val, minPlotted, allMin; - - vals = $.isArray(vals) ? vals : [vals]; - valcount = vals.length; - val = vals[0]; - isNull = all(null, vals); - allMin = all(xaxisOffset, vals, true); - - if (isNull) { - if (options.get('nullColor')) { - color = highlight ? options.get('nullColor') : this.calcHighlightColor(options.get('nullColor'), options); - y = (yoffset > 0) ? yoffset - 1 : yoffset; - return target.drawRect(x, y, this.barWidth - 1, 0, color, color); - } else { - return undefined; - } - } - yoffsetNeg = yoffset; - for (i = 0; i < valcount; i++) { - val = vals[i]; - - if (stacked && val === xaxisOffset) { - if (!allMin || minPlotted) { - continue; - } - minPlotted = true; - } - - if (range > 0) { - height = Math.floor(canvasHeightEf * ((Math.abs(val - xaxisOffset) / range))) + 1; - } else { - height = 1; - } - if (val < xaxisOffset || (val === xaxisOffset && yoffset === 0)) { - y = yoffsetNeg; - yoffsetNeg += height; - } else { - y = yoffset - height; - yoffset -= height; - } - color = this.calcColor(i, val, valuenum); - if (highlight) { - color = this.calcHighlightColor(color, options); - } - result.push(target.drawRect(x, y, this.barWidth - 1, height - 1, color, color)); - } - if (result.length === 1) { - return result[0]; - } - return result; - } - }); - - /** - * Tristate charts - */ - $.fn.sparkline.tristate = tristate = createClass($.fn.sparkline._base, barHighlightMixin, { - type: 'tristate', - - init: function (el, values, options, width, height) { - var barWidth = parseInt(options.get('barWidth'), 10), - barSpacing = parseInt(options.get('barSpacing'), 10); - tristate._super.init.call(this, el, values, options, width, height); - - this.regionShapes = {}; - this.barWidth = barWidth; - this.barSpacing = barSpacing; - this.totalBarWidth = barWidth + barSpacing; - this.values = $.map(values, Number); - this.width = width = (values.length * barWidth) + ((values.length - 1) * barSpacing); - - if ($.isArray(options.get('colorMap'))) { - this.colorMapByIndex = options.get('colorMap'); - this.colorMapByValue = null; - } else { - this.colorMapByIndex = null; - this.colorMapByValue = options.get('colorMap'); - if (this.colorMapByValue && this.colorMapByValue.get === undefined) { - this.colorMapByValue = new RangeMap(this.colorMapByValue); - } - } - this.initTarget(); - }, - - getRegion: function (el, x, y) { - return Math.floor(x / this.totalBarWidth); - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion; - return { - isNull: this.values[currentRegion] === undefined, - value: this.values[currentRegion], - color: this.calcColor(this.values[currentRegion], currentRegion), - offset: currentRegion - }; - }, - - calcColor: function (value, valuenum) { - var values = this.values, - options = this.options, - colorMapByIndex = this.colorMapByIndex, - colorMapByValue = this.colorMapByValue, - color, newColor; - - if (colorMapByValue && (newColor = colorMapByValue.get(value))) { - color = newColor; - } else if (colorMapByIndex && colorMapByIndex.length > valuenum) { - color = colorMapByIndex[valuenum]; - } else if (values[valuenum] < 0) { - color = options.get('negBarColor'); - } else if (values[valuenum] > 0) { - color = options.get('posBarColor'); - } else { - color = options.get('zeroBarColor'); - } - return color; - }, - - renderRegion: function (valuenum, highlight) { - var values = this.values, - options = this.options, - target = this.target, - canvasHeight, height, halfHeight, - x, y, color; - - canvasHeight = target.pixelHeight; - halfHeight = Math.round(canvasHeight / 2); - - x = valuenum * this.totalBarWidth; - if (values[valuenum] < 0) { - y = halfHeight; - height = halfHeight - 1; - } else if (values[valuenum] > 0) { - y = 0; - height = halfHeight - 1; - } else { - y = halfHeight - 1; - height = 2; - } - color = this.calcColor(values[valuenum], valuenum); - if (color === null) { - return; - } - if (highlight) { - color = this.calcHighlightColor(color, options); - } - return target.drawRect(x, y, this.barWidth - 1, height - 1, color, color); - } - }); - - /** - * Discrete charts - */ - $.fn.sparkline.discrete = discrete = createClass($.fn.sparkline._base, barHighlightMixin, { - type: 'discrete', - - init: function (el, values, options, width, height) { - discrete._super.init.call(this, el, values, options, width, height); - - this.regionShapes = {}; - this.values = values = $.map(values, Number); - this.min = Math.min.apply(Math, values); - this.max = Math.max.apply(Math, values); - this.range = this.max - this.min; - this.width = width = options.get('width') === 'auto' ? values.length * 2 : this.width; - this.interval = Math.floor(width / values.length); - this.itemWidth = width / values.length; - if (options.get('chartRangeMin') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMin') < this.min)) { - this.min = options.get('chartRangeMin'); - } - if (options.get('chartRangeMax') !== undefined && (options.get('chartRangeClip') || options.get('chartRangeMax') > this.max)) { - this.max = options.get('chartRangeMax'); - } - this.initTarget(); - if (this.target) { - this.lineHeight = options.get('lineHeight') === 'auto' ? Math.round(this.canvasHeight * 0.3) : options.get('lineHeight'); - } - }, - - getRegion: function (el, x, y) { - return Math.floor(x / this.itemWidth); - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion; - return { - isNull: this.values[currentRegion] === undefined, - value: this.values[currentRegion], - offset: currentRegion - }; - }, - - renderRegion: function (valuenum, highlight) { - var values = this.values, - options = this.options, - min = this.min, - max = this.max, - range = this.range, - interval = this.interval, - target = this.target, - canvasHeight = this.canvasHeight, - lineHeight = this.lineHeight, - pheight = canvasHeight - lineHeight, - ytop, val, color, x; - - val = clipval(values[valuenum], min, max); - x = valuenum * interval; - ytop = Math.round(pheight - pheight * ((val - min) / range)); - color = (options.get('thresholdColor') && val < options.get('thresholdValue')) ? options.get('thresholdColor') : options.get('lineColor'); - if (highlight) { - color = this.calcHighlightColor(color, options); - } - return target.drawLine(x, ytop, x, ytop + lineHeight, color); - } - }); - - /** - * Bullet charts - */ - $.fn.sparkline.bullet = bullet = createClass($.fn.sparkline._base, { - type: 'bullet', - - init: function (el, values, options, width, height) { - var min, max, vals; - bullet._super.init.call(this, el, values, options, width, height); - - // values: target, performance, range1, range2, range3 - this.values = values = normalizeValues(values); - // target or performance could be null - vals = values.slice(); - vals[0] = vals[0] === null ? vals[2] : vals[0]; - vals[1] = values[1] === null ? vals[2] : vals[1]; - min = Math.min.apply(Math, values); - max = Math.max.apply(Math, values); - if (options.get('base') === undefined) { - min = min < 0 ? min : 0; - } else { - min = options.get('base'); - } - this.min = min; - this.max = max; - this.range = max - min; - this.shapes = {}; - this.valueShapes = {}; - this.regiondata = {}; - this.width = width = options.get('width') === 'auto' ? '4.0em' : width; - this.target = this.$el.simpledraw(width, height, options.get('composite')); - if (!values.length) { - this.disabled = true; - } - this.initTarget(); - }, - - getRegion: function (el, x, y) { - var shapeid = this.target.getShapeAt(el, x, y); - return (shapeid !== undefined && this.shapes[shapeid] !== undefined) ? this.shapes[shapeid] : undefined; - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion; - return { - fieldkey: currentRegion.substr(0, 1), - value: this.values[currentRegion.substr(1)], - region: currentRegion - }; - }, - - changeHighlight: function (highlight) { - var currentRegion = this.currentRegion, - shapeid = this.valueShapes[currentRegion], - shape; - delete this.shapes[shapeid]; - switch (currentRegion.substr(0, 1)) { - case 'r': - shape = this.renderRange(currentRegion.substr(1), highlight); - break; - case 'p': - shape = this.renderPerformance(highlight); - break; - case 't': - shape = this.renderTarget(highlight); - break; - } - this.valueShapes[currentRegion] = shape.id; - this.shapes[shape.id] = currentRegion; - this.target.replaceWithShape(shapeid, shape); - }, - - renderRange: function (rn, highlight) { - var rangeval = this.values[rn], - rangewidth = Math.round(this.canvasWidth * ((rangeval - this.min) / this.range)), - color = this.options.get('rangeColors')[rn - 2]; - if (highlight) { - color = this.calcHighlightColor(color, this.options); - } - return this.target.drawRect(0, 0, rangewidth - 1, this.canvasHeight - 1, color, color); - }, - - renderPerformance: function (highlight) { - var perfval = this.values[1], - perfwidth = Math.round(this.canvasWidth * ((perfval - this.min) / this.range)), - color = this.options.get('performanceColor'); - if (highlight) { - color = this.calcHighlightColor(color, this.options); - } - return this.target.drawRect(0, Math.round(this.canvasHeight * 0.3), perfwidth - 1, - Math.round(this.canvasHeight * 0.4) - 1, color, color); - }, - - renderTarget: function (highlight) { - var targetval = this.values[0], - x = Math.round(this.canvasWidth * ((targetval - this.min) / this.range) - (this.options.get('targetWidth') / 2)), - targettop = Math.round(this.canvasHeight * 0.10), - targetheight = this.canvasHeight - (targettop * 2), - color = this.options.get('targetColor'); - if (highlight) { - color = this.calcHighlightColor(color, this.options); - } - return this.target.drawRect(x, targettop, this.options.get('targetWidth') - 1, targetheight - 1, color, color); - }, - - render: function () { - var vlen = this.values.length, - target = this.target, - i, shape; - if (!bullet._super.render.call(this)) { - return; - } - for (i = 2; i < vlen; i++) { - shape = this.renderRange(i).append(); - this.shapes[shape.id] = 'r' + i; - this.valueShapes['r' + i] = shape.id; - } - if (this.values[1] !== null) { - shape = this.renderPerformance().append(); - this.shapes[shape.id] = 'p1'; - this.valueShapes.p1 = shape.id; - } - if (this.values[0] !== null) { - shape = this.renderTarget().append(); - this.shapes[shape.id] = 't0'; - this.valueShapes.t0 = shape.id; - } - target.render(); - } - }); - - /** - * Pie charts - */ - $.fn.sparkline.pie = pie = createClass($.fn.sparkline._base, { - type: 'pie', - - init: function (el, values, options, width, height) { - var total = 0, i; - - pie._super.init.call(this, el, values, options, width, height); - - this.shapes = {}; // map shape ids to value offsets - this.valueShapes = {}; // maps value offsets to shape ids - this.values = values = $.map(values, Number); - - if (options.get('width') === 'auto') { - this.width = this.height; - } - - if (values.length > 0) { - for (i = values.length; i--;) { - total += values[i]; - } - } - this.total = total; - this.initTarget(); - this.radius = Math.floor(Math.min(this.canvasWidth, this.canvasHeight) / 2); - }, - - getRegion: function (el, x, y) { - var shapeid = this.target.getShapeAt(el, x, y); - return (shapeid !== undefined && this.shapes[shapeid] !== undefined) ? this.shapes[shapeid] : undefined; - }, - - getCurrentRegionFields: function () { - var currentRegion = this.currentRegion; - return { - isNull: this.values[currentRegion] === undefined, - value: this.values[currentRegion], - percent: this.values[currentRegion] / this.total * 100, - color: this.options.get('sliceColors')[currentRegion % this.options.get('sliceColors').length], - offset: currentRegion - }; - }, - - changeHighlight: function (highlight) { - var currentRegion = this.currentRegion, - newslice = this.renderSlice(currentRegion, highlight), - shapeid = this.valueShapes[currentRegion]; - delete this.shapes[shapeid]; - this.target.replaceWithShape(shapeid, newslice); - this.valueShapes[currentRegion] = newslice.id; - this.shapes[newslice.id] = currentRegion; - }, - - renderSlice: function (valuenum, highlight) { - var target = this.target, - options = this.options, - radius = this.radius, - borderWidth = options.get('borderWidth'), - offset = options.get('offset'), - circle = 2 * Math.PI, - values = this.values, - total = this.total, - next = offset ? (2*Math.PI)*(offset/360) : 0, - start, end, i, vlen, color; - - vlen = values.length; - for (i = 0; i < vlen; i++) { - start = next; - end = next; - if (total > 0) { // avoid divide by zero - end = next + (circle * (values[i] / total)); - } - if (valuenum === i) { - color = options.get('sliceColors')[i % options.get('sliceColors').length]; - if (highlight) { - color = this.calcHighlightColor(color, options); - } - - return target.drawPieSlice(radius, radius, radius - borderWidth, start, end, undefined, color); - } - next = end; - } - }, - - render: function () { - var target = this.target, - values = this.values, - options = this.options, - radius = this.radius, - borderWidth = options.get('borderWidth'), - shape, i; - - if (!pie._super.render.call(this)) { - return; - } - if (borderWidth) { - target.drawCircle(radius, radius, Math.floor(radius - (borderWidth / 2)), - options.get('borderColor'), undefined, borderWidth).append(); - } - for (i = values.length; i--;) { - if (values[i]) { // don't render zero values - shape = this.renderSlice(i).append(); - this.valueShapes[i] = shape.id; // store just the shapeid - this.shapes[shape.id] = i; - } - } - target.render(); - } - }); - - /** - * Box plots - */ - $.fn.sparkline.box = box = createClass($.fn.sparkline._base, { - type: 'box', - - init: function (el, values, options, width, height) { - box._super.init.call(this, el, values, options, width, height); - this.values = $.map(values, Number); - this.width = options.get('width') === 'auto' ? '4.0em' : width; - this.initTarget(); - if (!this.values.length) { - this.disabled = 1; - } - }, - - /** - * Simulate a single region - */ - getRegion: function () { - return 1; - }, - - getCurrentRegionFields: function () { - var result = [ - { field: 'lq', value: this.quartiles[0] }, - { field: 'med', value: this.quartiles[1] }, - { field: 'uq', value: this.quartiles[2] } - ]; - if (this.loutlier !== undefined) { - result.push({ field: 'lo', value: this.loutlier}); - } - if (this.routlier !== undefined) { - result.push({ field: 'ro', value: this.routlier}); - } - if (this.lwhisker !== undefined) { - result.push({ field: 'lw', value: this.lwhisker}); - } - if (this.rwhisker !== undefined) { - result.push({ field: 'rw', value: this.rwhisker}); - } - return result; - }, - - render: function () { - var target = this.target, - values = this.values, - vlen = values.length, - options = this.options, - canvasWidth = this.canvasWidth, - canvasHeight = this.canvasHeight, - minValue = options.get('chartRangeMin') === undefined ? Math.min.apply(Math, values) : options.get('chartRangeMin'), - maxValue = options.get('chartRangeMax') === undefined ? Math.max.apply(Math, values) : options.get('chartRangeMax'), - canvasLeft = 0, - lwhisker, loutlier, iqr, q1, q2, q3, rwhisker, routlier, i, - size, unitSize; - - if (!box._super.render.call(this)) { - return; - } - - if (options.get('raw')) { - if (options.get('showOutliers') && values.length > 5) { - loutlier = values[0]; - lwhisker = values[1]; - q1 = values[2]; - q2 = values[3]; - q3 = values[4]; - rwhisker = values[5]; - routlier = values[6]; - } else { - lwhisker = values[0]; - q1 = values[1]; - q2 = values[2]; - q3 = values[3]; - rwhisker = values[4]; - } - } else { - values.sort(function (a, b) { return a - b; }); - q1 = quartile(values, 1); - q2 = quartile(values, 2); - q3 = quartile(values, 3); - iqr = q3 - q1; - if (options.get('showOutliers')) { - lwhisker = rwhisker = undefined; - for (i = 0; i < vlen; i++) { - if (lwhisker === undefined && values[i] > q1 - (iqr * options.get('outlierIQR'))) { - lwhisker = values[i]; - } - if (values[i] < q3 + (iqr * options.get('outlierIQR'))) { - rwhisker = values[i]; - } - } - loutlier = values[0]; - routlier = values[vlen - 1]; - } else { - lwhisker = values[0]; - rwhisker = values[vlen - 1]; - } - } - this.quartiles = [q1, q2, q3]; - this.lwhisker = lwhisker; - this.rwhisker = rwhisker; - this.loutlier = loutlier; - this.routlier = routlier; - - unitSize = canvasWidth / (maxValue - minValue + 1); - if (options.get('showOutliers')) { - canvasLeft = Math.ceil(options.get('spotRadius')); - canvasWidth -= 2 * Math.ceil(options.get('spotRadius')); - unitSize = canvasWidth / (maxValue - minValue + 1); - if (loutlier < lwhisker) { - target.drawCircle((loutlier - minValue) * unitSize + canvasLeft, - canvasHeight / 2, - options.get('spotRadius'), - options.get('outlierLineColor'), - options.get('outlierFillColor')).append(); - } - if (routlier > rwhisker) { - target.drawCircle((routlier - minValue) * unitSize + canvasLeft, - canvasHeight / 2, - options.get('spotRadius'), - options.get('outlierLineColor'), - options.get('outlierFillColor')).append(); - } - } - - // box - target.drawRect( - Math.round((q1 - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight * 0.1), - Math.round((q3 - q1) * unitSize), - Math.round(canvasHeight * 0.8), - options.get('boxLineColor'), - options.get('boxFillColor')).append(); - // left whisker - target.drawLine( - Math.round((lwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 2), - Math.round((q1 - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 2), - options.get('lineColor')).append(); - target.drawLine( - Math.round((lwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 4), - Math.round((lwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight - canvasHeight / 4), - options.get('whiskerColor')).append(); - // right whisker - target.drawLine(Math.round((rwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 2), - Math.round((q3 - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 2), - options.get('lineColor')).append(); - target.drawLine( - Math.round((rwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight / 4), - Math.round((rwhisker - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight - canvasHeight / 4), - options.get('whiskerColor')).append(); - // median line - target.drawLine( - Math.round((q2 - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight * 0.1), - Math.round((q2 - minValue) * unitSize + canvasLeft), - Math.round(canvasHeight * 0.9), - options.get('medianColor')).append(); - if (options.get('target')) { - size = Math.ceil(options.get('spotRadius')); - target.drawLine( - Math.round((options.get('target') - minValue) * unitSize + canvasLeft), - Math.round((canvasHeight / 2) - size), - Math.round((options.get('target') - minValue) * unitSize + canvasLeft), - Math.round((canvasHeight / 2) + size), - options.get('targetColor')).append(); - target.drawLine( - Math.round((options.get('target') - minValue) * unitSize + canvasLeft - size), - Math.round(canvasHeight / 2), - Math.round((options.get('target') - minValue) * unitSize + canvasLeft + size), - Math.round(canvasHeight / 2), - options.get('targetColor')).append(); - } - target.render(); - } - }); - - // Setup a very simple "virtual canvas" to make drawing the few shapes we need easier - // This is accessible as $(foo).simpledraw() - - VShape = createClass({ - init: function (target, id, type, args) { - this.target = target; - this.id = id; - this.type = type; - this.args = args; - }, - append: function () { - this.target.appendShape(this); - return this; - } - }); - - VCanvas_base = createClass({ - _pxregex: /(\d+)(px)?\s*$/i, - - init: function (width, height, target) { - if (!width) { - return; - } - this.width = width; - this.height = height; - this.target = target; - this.lastShapeId = null; - if (target[0]) { - target = target[0]; - } - $.data(target, '_jqs_vcanvas', this); - }, - - drawLine: function (x1, y1, x2, y2, lineColor, lineWidth) { - return this.drawShape([[x1, y1], [x2, y2]], lineColor, lineWidth); - }, - - drawShape: function (path, lineColor, fillColor, lineWidth) { - return this._genShape('Shape', [path, lineColor, fillColor, lineWidth]); - }, - - drawCircle: function (x, y, radius, lineColor, fillColor, lineWidth) { - return this._genShape('Circle', [x, y, radius, lineColor, fillColor, lineWidth]); - }, - - drawPieSlice: function (x, y, radius, startAngle, endAngle, lineColor, fillColor) { - return this._genShape('PieSlice', [x, y, radius, startAngle, endAngle, lineColor, fillColor]); - }, - - drawRect: function (x, y, width, height, lineColor, fillColor) { - return this._genShape('Rect', [x, y, width, height, lineColor, fillColor]); - }, - - getElement: function () { - return this.canvas; - }, - - /** - * Return the most recently inserted shape id - */ - getLastShapeId: function () { - return this.lastShapeId; - }, - - /** - * Clear and reset the canvas - */ - reset: function () { - alert('reset not implemented'); - }, - - _insert: function (el, target) { - $(target).html(el); - }, - - /** - * Calculate the pixel dimensions of the canvas - */ - _calculatePixelDims: function (width, height, canvas) { - // XXX This should probably be a configurable option - var match; - match = this._pxregex.exec(height); - if (match) { - this.pixelHeight = match[1]; - } else { - this.pixelHeight = $(canvas).height(); - } - match = this._pxregex.exec(width); - if (match) { - this.pixelWidth = match[1]; - } else { - this.pixelWidth = $(canvas).width(); - } - }, - - /** - * Generate a shape object and id for later rendering - */ - _genShape: function (shapetype, shapeargs) { - var id = shapeCount++; - shapeargs.unshift(id); - return new VShape(this, id, shapetype, shapeargs); - }, - - /** - * Add a shape to the end of the render queue - */ - appendShape: function (shape) { - alert('appendShape not implemented'); - }, - - /** - * Replace one shape with another - */ - replaceWithShape: function (shapeid, shape) { - alert('replaceWithShape not implemented'); - }, - - /** - * Insert one shape after another in the render queue - */ - insertAfterShape: function (shapeid, shape) { - alert('insertAfterShape not implemented'); - }, - - /** - * Remove a shape from the queue - */ - removeShapeId: function (shapeid) { - alert('removeShapeId not implemented'); - }, - - /** - * Find a shape at the specified x/y co-ordinates - */ - getShapeAt: function (el, x, y) { - alert('getShapeAt not implemented'); - }, - - /** - * Render all queued shapes onto the canvas - */ - render: function () { - alert('render not implemented'); - } - }); - - VCanvas_canvas = createClass(VCanvas_base, { - init: function (width, height, target, interact) { - VCanvas_canvas._super.init.call(this, width, height, target); - this.canvas = document.createElement('canvas'); - if (target[0]) { - target = target[0]; - } - $.data(target, '_jqs_vcanvas', this); - $(this.canvas).css({ display: 'inline-block', width: width, height: height, verticalAlign: 'top' }); - this._insert(this.canvas, target); - this._calculatePixelDims(width, height, this.canvas); - this.canvas.width = this.pixelWidth; - this.canvas.height = this.pixelHeight; - this.interact = interact; - this.shapes = {}; - this.shapeseq = []; - this.currentTargetShapeId = undefined; - $(this.canvas).css({width: this.pixelWidth, height: this.pixelHeight}); - }, - - _getContext: function (lineColor, fillColor, lineWidth) { - var context = this.canvas.getContext('2d'); - if (lineColor !== undefined) { - context.strokeStyle = lineColor; - } - context.lineWidth = lineWidth === undefined ? 1 : lineWidth; - if (fillColor !== undefined) { - context.fillStyle = fillColor; - } - return context; - }, - - reset: function () { - var context = this._getContext(); - context.clearRect(0, 0, this.pixelWidth, this.pixelHeight); - this.shapes = {}; - this.shapeseq = []; - this.currentTargetShapeId = undefined; - }, - - _drawShape: function (shapeid, path, lineColor, fillColor, lineWidth) { - var context = this._getContext(lineColor, fillColor, lineWidth), - i, plen; - context.beginPath(); - context.moveTo(path[0][0] + 0.5, path[0][1] + 0.5); - for (i = 1, plen = path.length; i < plen; i++) { - context.lineTo(path[i][0] + 0.5, path[i][1] + 0.5); // the 0.5 offset gives us crisp pixel-width lines - } - if (lineColor !== undefined) { - context.stroke(); - } - if (fillColor !== undefined) { - context.fill(); - } - if (this.targetX !== undefined && this.targetY !== undefined && - context.isPointInPath(this.targetX, this.targetY)) { - this.currentTargetShapeId = shapeid; - } - }, - - _drawCircle: function (shapeid, x, y, radius, lineColor, fillColor, lineWidth) { - var context = this._getContext(lineColor, fillColor, lineWidth); - context.beginPath(); - context.arc(x, y, radius, 0, 2 * Math.PI, false); - if (this.targetX !== undefined && this.targetY !== undefined && - context.isPointInPath(this.targetX, this.targetY)) { - this.currentTargetShapeId = shapeid; - } - if (lineColor !== undefined) { - context.stroke(); - } - if (fillColor !== undefined) { - context.fill(); - } - }, - - _drawPieSlice: function (shapeid, x, y, radius, startAngle, endAngle, lineColor, fillColor) { - var context = this._getContext(lineColor, fillColor); - context.beginPath(); - context.moveTo(x, y); - context.arc(x, y, radius, startAngle, endAngle, false); - context.lineTo(x, y); - context.closePath(); - if (lineColor !== undefined) { - context.stroke(); - } - if (fillColor) { - context.fill(); - } - if (this.targetX !== undefined && this.targetY !== undefined && - context.isPointInPath(this.targetX, this.targetY)) { - this.currentTargetShapeId = shapeid; - } - }, - - _drawRect: function (shapeid, x, y, width, height, lineColor, fillColor) { - return this._drawShape(shapeid, [[x, y], [x + width, y], [x + width, y + height], [x, y + height], [x, y]], lineColor, fillColor); - }, - - appendShape: function (shape) { - this.shapes[shape.id] = shape; - this.shapeseq.push(shape.id); - this.lastShapeId = shape.id; - return shape.id; - }, - - replaceWithShape: function (shapeid, shape) { - var shapeseq = this.shapeseq, - i; - this.shapes[shape.id] = shape; - for (i = shapeseq.length; i--;) { - if (shapeseq[i] == shapeid) { - shapeseq[i] = shape.id; - } - } - delete this.shapes[shapeid]; - }, - - replaceWithShapes: function (shapeids, shapes) { - var shapeseq = this.shapeseq, - shapemap = {}, - sid, i, first; - - for (i = shapeids.length; i--;) { - shapemap[shapeids[i]] = true; - } - for (i = shapeseq.length; i--;) { - sid = shapeseq[i]; - if (shapemap[sid]) { - shapeseq.splice(i, 1); - delete this.shapes[sid]; - first = i; - } - } - for (i = shapes.length; i--;) { - shapeseq.splice(first, 0, shapes[i].id); - this.shapes[shapes[i].id] = shapes[i]; - } - - }, - - insertAfterShape: function (shapeid, shape) { - var shapeseq = this.shapeseq, - i; - for (i = shapeseq.length; i--;) { - if (shapeseq[i] === shapeid) { - shapeseq.splice(i + 1, 0, shape.id); - this.shapes[shape.id] = shape; - return; - } - } - }, - - removeShapeId: function (shapeid) { - var shapeseq = this.shapeseq, - i; - for (i = shapeseq.length; i--;) { - if (shapeseq[i] === shapeid) { - shapeseq.splice(i, 1); - break; - } - } - delete this.shapes[shapeid]; - }, - - getShapeAt: function (el, x, y) { - this.targetX = x; - this.targetY = y; - this.render(); - return this.currentTargetShapeId; - }, - - render: function () { - var shapeseq = this.shapeseq, - shapes = this.shapes, - shapeCount = shapeseq.length, - context = this._getContext(), - shapeid, shape, i; - context.clearRect(0, 0, this.pixelWidth, this.pixelHeight); - for (i = 0; i < shapeCount; i++) { - shapeid = shapeseq[i]; - shape = shapes[shapeid]; - this['_draw' + shape.type].apply(this, shape.args); - } - if (!this.interact) { - // not interactive so no need to keep the shapes array - this.shapes = {}; - this.shapeseq = []; - } - } - - }); - - VCanvas_vml = createClass(VCanvas_base, { - init: function (width, height, target) { - var groupel; - VCanvas_vml._super.init.call(this, width, height, target); - if (target[0]) { - target = target[0]; - } - $.data(target, '_jqs_vcanvas', this); - this.canvas = document.createElement('span'); - $(this.canvas).css({ display: 'inline-block', position: 'relative', overflow: 'hidden', width: width, height: height, margin: '0px', padding: '0px', verticalAlign: 'top'}); - this._insert(this.canvas, target); - this._calculatePixelDims(width, height, this.canvas); - this.canvas.width = this.pixelWidth; - this.canvas.height = this.pixelHeight; - groupel = ''; - this.canvas.insertAdjacentHTML('beforeEnd', groupel); - this.group = $(this.canvas).children()[0]; - this.rendered = false; - this.prerender = ''; - }, - - _drawShape: function (shapeid, path, lineColor, fillColor, lineWidth) { - var vpath = [], - initial, stroke, fill, closed, vel, plen, i; - for (i = 0, plen = path.length; i < plen; i++) { - vpath[i] = '' + (path[i][0]) + ',' + (path[i][1]); - } - initial = vpath.splice(0, 1); - lineWidth = lineWidth === undefined ? 1 : lineWidth; - stroke = lineColor === undefined ? ' stroked="false" ' : ' strokeWeight="' + lineWidth + 'px" strokeColor="' + lineColor + '" '; - fill = fillColor === undefined ? ' filled="false"' : ' fillColor="' + fillColor + '" filled="true" '; - closed = vpath[0] === vpath[vpath.length - 1] ? 'x ' : ''; - vel = '' + - ' '; - return vel; - }, - - _drawCircle: function (shapeid, x, y, radius, lineColor, fillColor, lineWidth) { - var stroke, fill, vel; - x -= radius; - y -= radius; - stroke = lineColor === undefined ? ' stroked="false" ' : ' strokeWeight="' + lineWidth + 'px" strokeColor="' + lineColor + '" '; - fill = fillColor === undefined ? ' filled="false"' : ' fillColor="' + fillColor + '" filled="true" '; - vel = ''; - return vel; - - }, - - _drawPieSlice: function (shapeid, x, y, radius, startAngle, endAngle, lineColor, fillColor) { - var vpath, startx, starty, endx, endy, stroke, fill, vel; - if (startAngle === endAngle) { - return ''; // VML seems to have problem when start angle equals end angle. - } - if ((endAngle - startAngle) === (2 * Math.PI)) { - startAngle = 0.0; // VML seems to have a problem when drawing a full circle that doesn't start 0 - endAngle = (2 * Math.PI); - } - - startx = x + Math.round(Math.cos(startAngle) * radius); - starty = y + Math.round(Math.sin(startAngle) * radius); - endx = x + Math.round(Math.cos(endAngle) * radius); - endy = y + Math.round(Math.sin(endAngle) * radius); - - if (startx === endx && starty === endy) { - if ((endAngle - startAngle) < Math.PI) { - // Prevent very small slices from being mistaken as a whole pie - return ''; - } - // essentially going to be the entire circle, so ignore startAngle - startx = endx = x + radius; - starty = endy = y; - } - - if (startx === endx && starty === endy && (endAngle - startAngle) < Math.PI) { - return ''; - } - - vpath = [x - radius, y - radius, x + radius, y + radius, startx, starty, endx, endy]; - stroke = lineColor === undefined ? ' stroked="false" ' : ' strokeWeight="1px" strokeColor="' + lineColor + '" '; - fill = fillColor === undefined ? ' filled="false"' : ' fillColor="' + fillColor + '" filled="true" '; - vel = '' + - ' '; - return vel; - }, - - _drawRect: function (shapeid, x, y, width, height, lineColor, fillColor) { - return this._drawShape(shapeid, [[x, y], [x, y + height], [x + width, y + height], [x + width, y], [x, y]], lineColor, fillColor); - }, - - reset: function () { - this.group.innerHTML = ''; - }, - - appendShape: function (shape) { - var vel = this['_draw' + shape.type].apply(this, shape.args); - if (this.rendered) { - this.group.insertAdjacentHTML('beforeEnd', vel); - } else { - this.prerender += vel; - } - this.lastShapeId = shape.id; - return shape.id; - }, - - replaceWithShape: function (shapeid, shape) { - var existing = $('#jqsshape' + shapeid), - vel = this['_draw' + shape.type].apply(this, shape.args); - existing[0].outerHTML = vel; - }, - - replaceWithShapes: function (shapeids, shapes) { - // replace the first shapeid with all the new shapes then toast the remaining old shapes - var existing = $('#jqsshape' + shapeids[0]), - replace = '', - slen = shapes.length, - i; - for (i = 0; i < slen; i++) { - replace += this['_draw' + shapes[i].type].apply(this, shapes[i].args); - } - existing[0].outerHTML = replace; - for (i = 1; i < shapeids.length; i++) { - $('#jqsshape' + shapeids[i]).remove(); - } - }, - - insertAfterShape: function (shapeid, shape) { - var existing = $('#jqsshape' + shapeid), - vel = this['_draw' + shape.type].apply(this, shape.args); - existing[0].insertAdjacentHTML('afterEnd', vel); - }, - - removeShapeId: function (shapeid) { - var existing = $('#jqsshape' + shapeid); - this.group.removeChild(existing[0]); - }, - - getShapeAt: function (el, x, y) { - var shapeid = el.id.substr(8); - return shapeid; - }, - - render: function () { - if (!this.rendered) { - // batch the intial render into a single repaint - this.group.innerHTML = this.prerender; - this.rendered = true; - } - } - }); - -}))}(document, Math)); \ No newline at end of file diff --git a/client/src/nls/de/locale.js b/client/src/nls/de/locale.js index 6ebc15a21843..38a9340cc3df 100644 --- a/client/src/nls/de/locale.js +++ b/client/src/nls/de/locale.js @@ -1,5 +1,5 @@ /** en/main localization hash - for use with requirejs' i18n plugin */ -define({ +export default { // ----------------------------------------------------------------------------- masthead "Analyze Data": "Daten analysieren", Workflow: "Arbeitsablauf", @@ -201,4 +201,4 @@ define({ // ---------------------------------------------------------------------------- misc. MVC Tags: "Variablen", "Edit annotation": "Anmerkung bearbeiten", -}); +}; diff --git a/client/src/nls/es/locale.js b/client/src/nls/es/locale.js index fbfaf079c891..4bff9ba71d1e 100644 --- a/client/src/nls/es/locale.js +++ b/client/src/nls/es/locale.js @@ -1,6 +1,6 @@ /** en/main localization hash - for use with requirejs' i18n plugin */ -define({ +export default { // ----------------------------------------------------------------------------- masthead "Analyze Data": "Analizar Datos", @@ -817,4 +817,4 @@ define({ // ---------------------------------------------------------------------------- workflow_editor_tests "tool tooltip": "Mensaje de información sobre herramientas", // ---------------------------------------------------------------------------- -}); +}; diff --git a/client/src/nls/fr/locale.js b/client/src/nls/fr/locale.js index a9e73af3d0c3..9787b27b2c5d 100644 --- a/client/src/nls/fr/locale.js +++ b/client/src/nls/fr/locale.js @@ -1,5 +1,5 @@ /** fr localization */ -define({ +export default { // ----------------------------------------------------------------------------- masthead "Analyze Data": "Analyse de données", Workflow: "Workflow", @@ -453,4 +453,4 @@ define({ // ---------------------------------------------------------------------------- workflow_editor_tests "tool tooltip": false, // ---------------------------------------------------------------------------- -}); +}; diff --git a/client/src/nls/index.js b/client/src/nls/index.js new file mode 100644 index 000000000000..b4359dac8881 --- /dev/null +++ b/client/src/nls/index.js @@ -0,0 +1,35 @@ +/** + * ES module locale aggregator + * This replaces the RequireJS i18n plugin functionality + * Loads all languages and returns them in the expected format + */ + +// Import root strings and supported languages +import { root, supportedLanguages } from "./locale.js"; + +// Import all language files +import frLocale from "./fr/locale.js"; +import esLocale from "./es/locale.js"; +import jaLocale from "./ja/locale.js"; +import zhLocale from "./zh/locale.js"; +import deLocale from "./de/locale.js"; + +// Build the locale strings object with the same structure +// that the i18n loader would have created +const localeStrings = { + __root: root, + __fr: frLocale, + __es: esLocale, + __ja: jaLocale, + __zh: zhLocale, + __de: deLocale, + // Add language codes without underscores for compatibility + fr: frLocale, + es: esLocale, + ja: jaLocale, + zh: zhLocale, + de: deLocale, +}; + +// Export with the same structure that the i18n loader would have created +export default localeStrings; diff --git a/client/src/nls/ja/locale.js b/client/src/nls/ja/locale.js index 54205bf383ab..ab6d76f28982 100644 --- a/client/src/nls/ja/locale.js +++ b/client/src/nls/ja/locale.js @@ -1,5 +1,5 @@ /** ja localization */ -define({ +export default { // ----------------------------------------------------------------------------- masthead "Analyze Data": "データ解析", Workflow: "ワークフロー", @@ -279,4 +279,4 @@ define({ "Edit annotation": "アノテーションを編集", //false, "Your workflows": "あなたのワークフロー", -}); +}; diff --git a/client/src/nls/locale.js b/client/src/nls/locale.js index 1990a8428481..4a1055d0f18d 100644 --- a/client/src/nls/locale.js +++ b/client/src/nls/locale.js @@ -1,467 +1,468 @@ -/** en/main localization hash - for use with requirejs' i18n plugin */ -define({ - root: { - // ----------------------------------------------------------------------------- masthead - "Analyze Data": false, - Workflow: false, - "Shared Data": false, - "Data Libraries": false, - Histories: false, - Workflows: false, - Visualizations: false, - Pages: false, - Visualization: false, - "New Track Browser": false, - "Saved Visualizations": false, - Admin: false, - Help: false, - Support: false, - Search: false, - "Mailing Lists": false, - Videos: false, - Wiki: false, - "How to Cite Galaxy": false, - "Interactive Tours": false, - User: false, - Login: false, - Register: false, - "Log in or Register": false, - "Signed in as": false, - Preferences: false, - "Custom Builds": false, - Logout: false, - "Saved Histories": false, - "Saved Datasets": false, - "Saved Pages": false, +/** en/main localization hash - converted to ES module */ +export const root = { + // ----------------------------------------------------------------------------- masthead + "Analyze Data": false, + Workflow: false, + "Shared Data": false, + "Data Libraries": false, + Histories: false, + Workflows: false, + Visualizations: false, + Pages: false, + Visualization: false, + "New Track Browser": false, + "Saved Visualizations": false, + Admin: false, + Help: false, + Support: false, + Search: false, + "Mailing Lists": false, + Videos: false, + Wiki: false, + "How to Cite Galaxy": false, + "Interactive Tours": false, + User: false, + Login: false, + Register: false, + "Log in or Register": false, + "Signed in as": false, + Preferences: false, + "Custom Builds": false, + Logout: false, + "Saved Histories": false, + "Saved Datasets": false, + "Saved Pages": false, - //Tooltip - "Account and saved data": false, - "Account registration or login": false, - "Support, contact, and community": false, - "Administer this Galaxy": false, - "Visualize datasets": false, - "Access published resources": false, - "Chain tools into workflows": false, - "Analysis home view": false, + //Tooltip + "Account and saved data": false, + "Account registration or login": false, + "Support, contact, and community": false, + "Administer this Galaxy": false, + "Visualize datasets": false, + "Access published resources": false, + "Chain tools into workflows": false, + "Analysis home view": false, - // ---------------------------------------------------------------------------- histories - // ---- history/options-menu - "History Lists": false, - // Saved histories is defined above. - // "Saved Histories": - // false, - "Histories Shared with Me": false, - "Current History": false, - "Create New": false, - "Copy History": false, - "Share or Publish": false, - "Show Structure": false, - "Extract Workflow": false, - // Delete is defined elsewhere, but is also in this menu. - // "Delete": - // false, - "Delete Permanently": false, - "Dataset Actions": false, - "Copy Datasets": false, - "Dataset Security": false, - "Resume Paused Jobs": false, - "Collapse Expanded Datasets": false, - "Unhide Hidden Datasets": false, - "Delete Hidden Datasets": false, - "Purge Deleted Datasets": false, - Downloads: false, - "Export Tool Citations": false, - "Export History to File": false, - "Other Actions": false, - "Import from File": false, - Webhooks: false, + // ---------------------------------------------------------------------------- histories + // ---- history/options-menu + "History Lists": false, + // Saved histories is defined above. + // "Saved Histories": + // false, + "Histories Shared with Me": false, + "Current History": false, + "Create New": false, + "Copy History": false, + "Share or Publish": false, + "Show Structure": false, + "Extract Workflow": false, + // Delete is defined elsewhere, but is also in this menu. + // "Delete": + // false, + "Delete Permanently": false, + "Dataset Actions": false, + "Copy Datasets": false, + "Dataset Security": false, + "Resume Paused Jobs": false, + "Collapse Expanded Datasets": false, + "Unhide Hidden Datasets": false, + "Delete Hidden Datasets": false, + "Purge Deleted Datasets": false, + Downloads: false, + "Export Tool Citations": false, + "Export History to File": false, + "Other Actions": false, + "Import from File": false, + Webhooks: false, - // ---- history-model - // ---- history-view - "This history is empty": false, - "No matching datasets found": false, - "An error occurred while getting updates from the server": false, - "Please contact a Galaxy administrator if the problem persists": false, - //TODO: - //"An error was encountered while <% where %>" : - //false, - "search datasets": false, - "You are currently viewing a deleted history!": false, - "You are over your disk quota": false, - "Tool execution is on hold until your disk usage drops below your allocated quota": false, - All: false, - None: false, - "For all selected": false, + // ---- history-model + // ---- history-view + "This history is empty": false, + "No matching datasets found": false, + "An error occurred while getting updates from the server": false, + "Please contact a Galaxy administrator if the problem persists": false, + //TODO: + //"An error was encountered while <% where %>" : + //false, + "search datasets": false, + "You are currently viewing a deleted history!": false, + "You are over your disk quota": false, + "Tool execution is on hold until your disk usage drops below your allocated quota": false, + All: false, + None: false, + "For all selected": false, - // ---- history-view-edit - "Edit history tags": false, - "Edit history annotation": false, - "Click to rename history": false, - // multi operations - "Operations on multiple datasets": false, - "Hide datasets": false, - "Unhide datasets": false, - "Delete datasets": false, - "Undelete datasets": false, - "Permanently delete datasets": false, - "This will permanently remove the data in your datasets. Are you sure?": false, + // ---- history-view-edit + "Edit history tags": false, + "Edit history annotation": false, + "Click to rename history": false, + // multi operations + "Operations on multiple datasets": false, + "Hide datasets": false, + "Unhide datasets": false, + "Delete datasets": false, + "Undelete datasets": false, + "Permanently delete datasets": false, + "This will permanently remove the data in your datasets. Are you sure?": false, - // ---- history-view-annotated - Dataset: false, - Annotation: false, + // ---- history-view-annotated + Dataset: false, + Annotation: false, - // ---- history-view-edit-current - "This history is empty. Click 'Get Data' on the left tool menu to start": false, - "You must be logged in to create histories": false, - //TODO: - //"You can <% loadYourOwn %> or <% externalSource %>" : - //false, - //"load your own data" : - //false, - //"get data from an external source" : - //false, + // ---- history-view-edit-current + "This history is empty. Click 'Get Data' on the left tool menu to start": false, + "You must be logged in to create histories": false, + //TODO: + //"You can <% loadYourOwn %> or <% externalSource %>" : + //false, + //"load your own data" : + //false, + //"get data from an external source" : + //false, - // these aren't in zh/ginga.po and the template doesn't localize - //"Include Deleted Datasets" : - //false, - //"Include Hidden Datasets" : - //false, + // these aren't in zh/ginga.po and the template doesn't localize + //"Include Deleted Datasets" : + //false, + //"Include Hidden Datasets" : + //false, - // ---------------------------------------------------------------------------- datasets - // ---- hda-model - "Unable to purge dataset": false, + // ---------------------------------------------------------------------------- datasets + // ---- hda-model + "Unable to purge dataset": false, - // ---- hda-base - // display button - "Cannot display datasets removed from disk": false, - "This dataset must finish uploading before it can be viewed": false, - "This dataset is not yet viewable": false, - "View data": false, - // download button - Download: false, - "Download dataset": false, - "Additional files": false, - // info/show_params - "View details": false, + // ---- hda-base + // display button + "Cannot display datasets removed from disk": false, + "This dataset must finish uploading before it can be viewed": false, + "This dataset is not yet viewable": false, + "View data": false, + // download button + Download: false, + "Download dataset": false, + "Additional files": false, + // info/show_params + "View details": false, - // dataset states - // state: new - "This is a new dataset and not all of its data are available yet": false, - // state: noPermission - "You do not have permission to view this dataset": false, - // state: discarded - "The job creating this dataset was cancelled before completion": false, - // state: queued - "This job is waiting to run": false, - // state: upload - "This dataset is currently uploading": false, - // state: setting_metadata - "Metadata is being auto-detected": false, - // state: running - "This job is currently running": false, - // state: paused - 'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume': false, - // state: error - "An error occurred with this dataset": false, - // state: empty - "No data": false, - // state: failed_metadata - "An error occurred setting the metadata for this dataset": false, + // dataset states + // state: new + "This is a new dataset and not all of its data are available yet": false, + // state: noPermission + "You do not have permission to view this dataset": false, + // state: discarded + "The job creating this dataset was cancelled before completion": false, + // state: queued + "This job is waiting to run": false, + // state: upload + "This dataset is currently uploading": false, + // state: setting_metadata + "Metadata is being auto-detected": false, + // state: running + "This job is currently running": false, + // state: paused + 'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume': false, + // state: error + "An error occurred with this dataset": false, + // state: empty + "No data": false, + // state: failed_metadata + "An error occurred setting the metadata for this dataset": false, - // ajax error prefix - "There was an error getting the data for this dataset": false, + // ajax error prefix + "There was an error getting the data for this dataset": false, - // purged'd/del'd msg - "This dataset has been deleted and removed from disk": false, - "This dataset has been deleted": false, - "This dataset has been hidden": false, + // purged'd/del'd msg + "This dataset has been deleted and removed from disk": false, + "This dataset has been deleted": false, + "This dataset has been hidden": false, - format: false, - database: false, + format: false, + database: false, - // ---- hda-edit - "Edit attributes": false, - "Cannot edit attributes of datasets removed from disk": false, - "Undelete dataset to edit attributes": false, - "This dataset must finish uploading before it can be edited": false, - "This dataset is not yet editable": false, + // ---- hda-edit + "Edit attributes": false, + "Cannot edit attributes of datasets removed from disk": false, + "Undelete dataset to edit attributes": false, + "This dataset must finish uploading before it can be edited": false, + "This dataset is not yet editable": false, - Delete: false, - "Dataset is already deleted": false, + Delete: false, + "Dataset is already deleted": false, - "View or report this error": false, + "View or report this error": false, - "Run this job again": false, + "Run this job again": false, - Visualize: false, - "Visualize in": false, + Visualize: false, + "Visualize in": false, - "Undelete it": false, - "Permanently remove it from disk": false, - "Unhide it": false, + "Undelete it": false, + "Permanently remove it from disk": false, + "Unhide it": false, - "You may be able to": false, - "set it manually or retry auto-detection": false, + "You may be able to": false, + "set it manually or retry auto-detection": false, - "Edit dataset tags": false, - "Edit dataset annotation": false, + "Edit dataset tags": false, + "Edit dataset annotation": false, - "Tool Help": false, + "Tool Help": false, - // ---------------------------------------------------------------------------- admin - "Reset passwords": false, - "Search Tool Shed": false, - "Monitor installing repositories": false, - "Manage installed tools": false, - "Reset metadata": false, - "Download local tool": false, - "Tool lineage": false, - "Reload a tool's configuration": false, - "View Tool Error Logs": false, - "Manage Allowlist": false, - "Manage Tool Dependencies": false, - Users: false, - Groups: false, - "API keys": false, - "Impersonate a user": false, - Data: false, - Quotas: false, - Roles: false, - "Local data": false, - "Form Definitions": false, + // ---------------------------------------------------------------------------- admin + "Reset passwords": false, + "Search Tool Shed": false, + "Monitor installing repositories": false, + "Manage installed tools": false, + "Reset metadata": false, + "Download local tool": false, + "Tool lineage": false, + "Reload a tool's configuration": false, + "View Tool Error Logs": false, + "Manage Allowlist": false, + "Manage Tool Dependencies": false, + Users: false, + Groups: false, + "API keys": false, + "Impersonate a user": false, + Data: false, + Quotas: false, + Roles: false, + "Local data": false, + "Form Definitions": false, - // ---------------------------------------------------------------------------- Window Manager - "Enable/Disable Window Manager": false, - "Show/Hide Window Manager": false, + // ---------------------------------------------------------------------------- Window Manager + "Enable/Disable Window Manager": false, + "Show/Hide Window Manager": false, - // ---------------------------------------------------------------------------- misc. MVC - Tags: false, - "Edit annotation": false, + // ---------------------------------------------------------------------------- misc. MVC + Tags: false, + "Edit annotation": false, - // ---------------------------------------------------------------------------- galaxy.pages - Subscript: false, - Superscript: false, - // ---------------------------------------------------------------------------- data - Trackster: false, - Visualize: false, - // ---------------------------------------------------------------------------- dataset-error - "Any additional comments you can provide regarding what you were doing at the time of the bug.": false, - "Your email address": false, - Report: false, - "Error Report": false, - // ---------------------------------------------------------------------------- dataset-li - "Dataset details": false, - // ---------------------------------------------------------------------------- dataset-edit-attributes - "Save permissions.": false, - "Change the datatype to a new type.": false, - "Convert the datatype to a new format.": false, - "Save attributes of the dataset.": false, - "Change data type": false, - "Edit dataset attributes": false, - "Save permissions": false, - "Manage dataset permissions": false, - "Change datatype": false, - "Convert datatype": false, - "Convert to new format": false, - Save: false, - Permissions: false, - Datatypes: false, - Convert: false, - Attributes: false, - // ---------------------------------------------------------------------------- dataset-li-edit - Visualization: false, - // ---------------------------------------------------------------------------- library-dataset-view - "Import into History": false, - // ---------------------------------------------------------------------------- library-foldertoolbar-view - "Location Details": false, - "Deleting selected items": false, - "Please select folders or files": false, - "Please enter paths to import": false, - "Adding datasets from your history": false, - "Create New Folder": false, - // ---------------------------------------------------------------------------- library-librarytoolbar-view - "Create New Library": false, - // ---------------------------------------------------------------------------- tours - Tours: false, - // ---------------------------------------------------------------------------- user-preferences - "Click here to sign out of all sessions.": false, - "Add or remove custom builds using history datasets.": false, - "Associate OpenIDs with your account.": false, - "Customize your Toolbox by displaying or omitting sets of Tools.": false, - "Access your current API key or create a new one.": false, - "Allows you to change your login credentials.": false, - "User preferences": false, - "Sign out": false, - "Manage custom builds": false, - "Manage OpenIDs": false, - "Manage Toolbox filters": false, - "Manage API Key": false, - "Set dataset permissions for new histories": false, - "Change Password": false, - "Manage Information": false, - // ---------------------------------------------------------------------------- history-list - Histories: false, - // ---------------------------------------------------------------------------- shed-list-view - "Configured Tool Sheds": false, - // ---------------------------------------------------------------------------- repository-queue-view - "Repository Queue": false, - // ---------------------------------------------------------------------------- repo-status-view - "Repository Status": false, - // ---------------------------------------------------------------------------- workflows-view - "Workflows Missing Tools": false, - // ---------------------------------------------------------------------------- tool-form-base - "See in Tool Shed": false, - Requirements: false, - Download: false, - Share: false, - Search: false, - // ---------------------------------------------------------------------------- tool-form-composite - "Workflow submission failed": false, - "Run workflow": false, - // ---------------------------------------------------------------------------- tool-form - "Job submission failed": false, - Execute: false, - "Tool request failed": false, - // ---------------------------------------------------------------------------- workflow - Workflows: false, - // ---------------------------------------------------------------------------- workflow-view - "Copy and insert individual steps": false, - Warning: false, - // ---------------------------------------------------------------------------- workflow-forms - "An email notification will be sent when the job has completed.": false, - "Add a step label.": false, - "Assign columns": false, - // ---------------------------------------------------------------------------- form-repeat - "Delete this repeat block": false, - placeholder: false, - Repeat: false, - // ---------------------------------------------------------------------------- ui-frames - Error: false, - Close: false, - // ---------------------------------------------------------------------------- upload-view - "Download from web or upload from disk": false, - Collection: false, - Composite: false, - Regular: false, - // ---------------------------------------------------------------------------- default-row - "Upload configuration": false, - // ---------------------------------------------------------------------------- default-view - "FTP files": false, - Reset: false, - Pause: false, - Start: false, - "Choose FTP file": false, - "Choose local file": false, - // ---------------------------------------------------------------------------- collection-view - Build: false, - "Choose FTP files": false, - "Choose local files": false, - // ---------------------------------------------------------------------------- composite-row - Select: false, - // ---------------------------------------------------------------------------- list-of-pairs-collection-creator - "Create a collection of paired datasets": false, - // ---------------------------------------------------------------------------- history-panel - "View all histories": false, - "History options": false, - "Refresh history": false, - // ---------------------------------------------------------------------------- admin-panel - "View error logs": false, - "View lineage": false, - "Manage dependencies": false, - "Manage allowlist": false, - "Manage metadata": false, - "Manage tools": false, - "Monitor installation": false, - "Install new tools": false, - "Tool Management": false, - Forms: false, - Roles: false, - Groups: false, - Quotas: false, - Users: false, - "User Management": false, - "Manage jobs": false, - "Display applications": false, - "Data tables": false, - "Data types": false, - Server: false, - // ---------------------------------------------------------------------------- circster - "Could Not Save": false, - "Saving...": false, - Settings: false, - "Add tracks": false, - // ---------------------------------------------------------------------------- trackster - "New Visualization": false, - "Add Data to Saved Visualization": false, - "Close visualization": false, - Circster: false, - Bookmarks: false, - "Add group": false, - // ---------------------------------------------------------------------------- sweepster - "Remove parameter from tree": false, - "Add parameter to tree": false, - Remove: false, - // ---------------------------------------------------------------------------- visualization - "Select datasets for new tracks": false, - Libraries: false, - // ---------------------------------------------------------------------------- phyloviz - "Zoom out": false, - "Zoom in": false, - "Phyloviz Help": false, - "Save visualization": false, - "PhyloViz Settings": false, - Title: false, - // ---------------------------------------------------------------------------- filters - "Filtering Dataset": false, - "Filter Dataset": false, - // ---------------------------------------------------------------------------- tracks - "Show individual tracks": false, - "Trackster Error": false, - "Tool parameter space visualization": false, - Tool: false, - "Set as overview": false, - "Set display mode": false, - Filters: false, - "Show composite track": false, - "Edit settings": false, - // ---------------------------------------------------------------------------- modal_tests - "Test title": false, - // ---------------------------------------------------------------------------- popover_tests - "Test Title": false, - "Test button": false, - // ---------------------------------------------------------------------------- ui_tests - title: false, - // ---------------------------------------------------------------------------- user-custom-builds - "Create new Build": false, - "Delete custom build.": false, - "Provide the data source.": false, - // ---------------------------------------------------------------------------- Window Manager - "Next in History": false, - "Previous in History": false, - // ---------------------------------------------------------------------------- generic-nav-view - "Chat online": false, - // ---------------------------------------------------------------------------- ui-select-content - "Multiple collections": false, - "Dataset collections": false, - "Dataset collection": false, - "Multiple datasets": false, - "Single dataset": false, - // ---------------------------------------------------------------------------- upload-button - "Download from URL or upload files from disk": false, - // ---------------------------------------------------------------------------- workflow_editor_tests - "tool tooltip": false, - // ---------------------------------------------------------------------------- - "Subscribe to mailing list": false, - "Already have an account?": false, - "Log in here.": false, - "Create a Galaxy account": false, - "Or, register with email": false, - "Forgot password?": false, - "Register here.": false, - "Click here to reset your password.": false, - }, + // ---------------------------------------------------------------------------- galaxy.pages + Subscript: false, + Superscript: false, + // ---------------------------------------------------------------------------- data + Trackster: false, + Visualize: false, + // ---------------------------------------------------------------------------- dataset-error + "Any additional comments you can provide regarding what you were doing at the time of the bug.": false, + "Your email address": false, + Report: false, + "Error Report": false, + // ---------------------------------------------------------------------------- dataset-li + "Dataset details": false, + // ---------------------------------------------------------------------------- dataset-edit-attributes + "Save permissions.": false, + "Change the datatype to a new type.": false, + "Convert the datatype to a new format.": false, + "Save attributes of the dataset.": false, + "Change data type": false, + "Edit dataset attributes": false, + "Save permissions": false, + "Manage dataset permissions": false, + "Change datatype": false, + "Convert datatype": false, + "Convert to new format": false, + Save: false, + Permissions: false, + Datatypes: false, + Convert: false, + Attributes: false, + // ---------------------------------------------------------------------------- dataset-li-edit + Visualization: false, + // ---------------------------------------------------------------------------- library-dataset-view + "Import into History": false, + // ---------------------------------------------------------------------------- library-foldertoolbar-view + "Location Details": false, + "Deleting selected items": false, + "Please select folders or files": false, + "Please enter paths to import": false, + "Adding datasets from your history": false, + "Create New Folder": false, + // ---------------------------------------------------------------------------- library-librarytoolbar-view + "Create New Library": false, + // ---------------------------------------------------------------------------- tours + Tours: false, + // ---------------------------------------------------------------------------- user-preferences + "Click here to sign out of all sessions.": false, + "Add or remove custom builds using history datasets.": false, + "Associate OpenIDs with your account.": false, + "Customize your Toolbox by displaying or omitting sets of Tools.": false, + "Access your current API key or create a new one.": false, + "Allows you to change your login credentials.": false, + "User preferences": false, + "Sign out": false, + "Manage custom builds": false, + "Manage OpenIDs": false, + "Manage Toolbox filters": false, + "Manage API Key": false, + "Set dataset permissions for new histories": false, + "Change Password": false, + "Manage Information": false, + // ---------------------------------------------------------------------------- history-list + Histories: false, + // ---------------------------------------------------------------------------- shed-list-view + "Configured Tool Sheds": false, + // ---------------------------------------------------------------------------- repository-queue-view + "Repository Queue": false, + // ---------------------------------------------------------------------------- repo-status-view + "Repository Status": false, + // ---------------------------------------------------------------------------- workflows-view + "Workflows Missing Tools": false, + // ---------------------------------------------------------------------------- tool-form-base + "See in Tool Shed": false, + Requirements: false, + Download: false, + Share: false, + Search: false, + // ---------------------------------------------------------------------------- tool-form-composite + "Workflow submission failed": false, + "Run workflow": false, + // ---------------------------------------------------------------------------- tool-form + "Job submission failed": false, + Execute: false, + "Tool request failed": false, + // ---------------------------------------------------------------------------- workflow + Workflows: false, + // ---------------------------------------------------------------------------- workflow-view + "Copy and insert individual steps": false, + Warning: false, + // ---------------------------------------------------------------------------- workflow-forms + "An email notification will be sent when the job has completed.": false, + "Add a step label.": false, + "Assign columns": false, + // ---------------------------------------------------------------------------- form-repeat + "Delete this repeat block": false, + placeholder: false, + Repeat: false, + // ---------------------------------------------------------------------------- ui-frames + Error: false, + Close: false, + // ---------------------------------------------------------------------------- upload-view + "Download from web or upload from disk": false, + Collection: false, + Composite: false, + Regular: false, + // ---------------------------------------------------------------------------- default-row + "Upload configuration": false, + // ---------------------------------------------------------------------------- default-view + "FTP files": false, + Reset: false, + Pause: false, + Start: false, + "Choose FTP file": false, + "Choose local file": false, + // ---------------------------------------------------------------------------- collection-view + Build: false, + "Choose FTP files": false, + "Choose local files": false, + // ---------------------------------------------------------------------------- composite-row + Select: false, + // ---------------------------------------------------------------------------- list-of-pairs-collection-creator + "Create a collection of paired datasets": false, + // ---------------------------------------------------------------------------- history-panel + "View all histories": false, + "History options": false, + "Refresh history": false, + // ---------------------------------------------------------------------------- admin-panel + "View error logs": false, + "View lineage": false, + "Manage dependencies": false, + "Manage allowlist": false, + "Manage metadata": false, + "Manage tools": false, + "Monitor installation": false, + "Install new tools": false, + "Tool Management": false, + Forms: false, + Roles: false, + Groups: false, + Quotas: false, + Users: false, + "User Management": false, + "Manage jobs": false, + "Display applications": false, + "Data tables": false, + "Data types": false, + Server: false, + // ---------------------------------------------------------------------------- circster + "Could Not Save": false, + "Saving...": false, + Settings: false, + "Add tracks": false, + // ---------------------------------------------------------------------------- trackster + "New Visualization": false, + "Add Data to Saved Visualization": false, + "Close visualization": false, + Circster: false, + Bookmarks: false, + "Add group": false, + // ---------------------------------------------------------------------------- sweepster + "Remove parameter from tree": false, + "Add parameter to tree": false, + Remove: false, + // ---------------------------------------------------------------------------- visualization + "Select datasets for new tracks": false, + Libraries: false, + // ---------------------------------------------------------------------------- phyloviz + "Zoom out": false, + "Zoom in": false, + "Phyloviz Help": false, + "Save visualization": false, + "PhyloViz Settings": false, + Title: false, + // ---------------------------------------------------------------------------- filters + "Filtering Dataset": false, + "Filter Dataset": false, + // ---------------------------------------------------------------------------- tracks + "Show individual tracks": false, + "Trackster Error": false, + "Tool parameter space visualization": false, + Tool: false, + "Set as overview": false, + "Set display mode": false, + Filters: false, + "Show composite track": false, + "Edit settings": false, + // ---------------------------------------------------------------------------- modal_tests + "Test title": false, + // ---------------------------------------------------------------------------- popover_tests + "Test Title": false, + "Test button": false, + // ---------------------------------------------------------------------------- ui_tests + title: false, + // ---------------------------------------------------------------------------- user-custom-builds + "Create new Build": false, + "Delete custom build.": false, + "Provide the data source.": false, + // ---------------------------------------------------------------------------- Window Manager + "Next in History": false, + "Previous in History": false, + // ---------------------------------------------------------------------------- generic-nav-view + "Chat online": false, + // ---------------------------------------------------------------------------- ui-select-content + "Multiple collections": false, + "Dataset collections": false, + "Dataset collection": false, + "Multiple datasets": false, + "Single dataset": false, + // ---------------------------------------------------------------------------- upload-button + "Download from URL or upload files from disk": false, + // ---------------------------------------------------------------------------- workflow_editor_tests + "tool tooltip": false, + // ---------------------------------------------------------------------------- + "Subscribe to mailing list": false, + "Already have an account?": false, + "Log in here.": false, + "Create a Galaxy account": false, + "Or, register with email": false, + "Forgot password?": false, + "Register here.": false, + "Click here to reset your password.": false, +}; + +export const supportedLanguages = { ja: true, fr: true, zh: true, es: true, -}); +}; diff --git a/client/src/nls/zh/locale.js b/client/src/nls/zh/locale.js index 8b6526c31710..33e717d5d295 100644 --- a/client/src/nls/zh/locale.js +++ b/client/src/nls/zh/locale.js @@ -1,6 +1,6 @@ /** zh localization */ /* any suggestions, please contact me: ishenweiyan@foxmail.com */ -define({ +export default { // ----------------------------------------------------------------------------- masthead "Analyze Data": "数据分析", Workflow: "工作流程", @@ -471,4 +471,4 @@ define({ ja: true, fr: true, zh: true, -}); +}; diff --git a/client/src/onload/index.js b/client/src/onload/index.js index 18630226b619..2e3fa89a24c3 100644 --- a/client/src/onload/index.js +++ b/client/src/onload/index.js @@ -1,7 +1,7 @@ // index.ts import "bootstrap"; import "@/style/scss/base.scss"; -import "./publicPath"; +// Default Font import "@fontsource/atkinson-hyperlegible"; import "@fontsource/atkinson-hyperlegible/700.css"; diff --git a/client/src/onload/publicPath.js b/client/src/onload/publicPath.js deleted file mode 100644 index ecb73012a4db..000000000000 --- a/client/src/onload/publicPath.js +++ /dev/null @@ -1,11 +0,0 @@ -/** - * Set dynamically loaded webpack public path. (https://webpack.js.org/guides/public-path/#on-the-fly) - * This is, by default, just `/static/dist/`, but if galaxy is being served at - * a prefix (e.g. `/galaxy/`), this must be accounted for before any - * dynamic bundle imports load, otherwise they will fail. - */ - -import { getAppRoot } from "./loadConfig"; - -// eslint-disable-next-line no-unused-vars, no-undef -__webpack_public_path__ = `${getAppRoot()}static/dist/`; diff --git a/client/src/polyfills.js b/client/src/polyfills.js deleted file mode 100644 index 4aa4d1e1fb85..000000000000 --- a/client/src/polyfills.js +++ /dev/null @@ -1,7 +0,0 @@ -/** - Perform feature inference and redirect if below some minimum (must have canvas, etc.) - and polyfill for non-standard features. - */ - -import "core-js/stable"; -import "regenerator-runtime/runtime"; diff --git a/client/src/utils/localization.js b/client/src/utils/localization.js index e8ceb519b6cb..9988ddaab733 100644 --- a/client/src/utils/localization.js +++ b/client/src/utils/localization.js @@ -1,4 +1,4 @@ -import localeStrings from "i18n!nls/locale"; +import localeStrings from "@/nls/index.js"; /** * @param {String} strToLocalize diff --git a/client/tsconfig.webpack.json b/client/tsconfig.webpack.json deleted file mode 100644 index f903a64dcaa3..000000000000 --- a/client/tsconfig.webpack.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "extends": "./tsconfig.json", - "exclude": ["./src/**/*.test.ts", "./tests/**/*.ts", "**/__mocks__/**"] -} diff --git a/client/types/globals.d.ts b/client/types/globals.d.ts index 97ec1d6ccf98..da6675b11449 100644 --- a/client/types/globals.d.ts +++ b/client/types/globals.d.ts @@ -1,4 +1,3 @@ -// Webpack-injected globals. -declare const __webpack_public_path__: string; +// Build-injected globals declare const __buildTimestamp__: string; declare const __license__: string; diff --git a/client/types/vite.d.ts b/client/types/vite.d.ts new file mode 100644 index 000000000000..ebba1dcccbc5 --- /dev/null +++ b/client/types/vite.d.ts @@ -0,0 +1,22 @@ +// Type declarations for Vite-specific imports + +// Monaco editor workers with ?worker suffix +declare module "monaco-editor/esm/vs/editor/editor.worker?worker" { + const workerConstructor: new () => Worker; + export default workerConstructor; +} + +declare module "monaco-editor/esm/vs/language/json/json.worker?worker" { + const workerConstructor: new () => Worker; + export default workerConstructor; +} + +declare module "monaco-editor/esm/vs/language/typescript/ts.worker?worker" { + const workerConstructor: new () => Worker; + export default workerConstructor; +} + +declare module "monaco-yaml/yaml.worker?worker" { + const workerConstructor: new () => Worker; + export default workerConstructor; +} diff --git a/client/vite-plugin-build-metadata.js b/client/vite-plugin-build-metadata.js new file mode 100644 index 000000000000..164ef00c61ce --- /dev/null +++ b/client/vite-plugin-build-metadata.js @@ -0,0 +1,55 @@ +import { writeFileSync } from "fs"; +import { resolve } from "path"; +import { createHash } from "crypto"; + +/** + * Vite plugin to generate build metadata JSON file + */ +export function buildMetadataPlugin(options = {}) { + const { filename = resolve(__dirname, "../lib/galaxy/web/framework/meta.json"), buildDate = new Date() } = options; + + let buildHash = ""; + + return { + name: "vite-plugin-build-metadata", + + // Capture the build hash during bundle generation + generateBundle(outputOptions, bundle) { + // Get hash from the first JavaScript chunk + for (const [fileName, chunk] of Object.entries(bundle)) { + if (chunk.type === "chunk" && fileName.endsWith(".js")) { + // Extract hash from filename if present (e.g., chunk-[hash].js) + const hashMatch = fileName.match(/[.-]([a-f0-9]{8})[.-]/); + if (hashMatch) { + buildHash = hashMatch[1]; + break; + } + } + } + + // If no hash found in filenames, generate one from bundle content + if (!buildHash) { + const bundleContent = Object.values(bundle) + .map((asset) => (asset.type === "chunk" ? asset.code : asset.source)) + .join(""); + buildHash = createHash("md5").update(bundleContent).digest("hex").slice(0, 8); + } + }, + + // Write the metadata file after build completes + closeBundle() { + const metadata = { + hash: buildHash, + epoch: Date.parse(buildDate), + }; + + try { + writeFileSync(filename, JSON.stringify(metadata)); + console.log(`Build metadata written to ${filename}`); + } catch (error) { + console.error("Failed to write build metadata:", error); + throw error; + } + }, + }; +} diff --git a/client/vite-plugin-galaxy-dev-server.js b/client/vite-plugin-galaxy-dev-server.js new file mode 100644 index 000000000000..11e46edfb61a --- /dev/null +++ b/client/vite-plugin-galaxy-dev-server.js @@ -0,0 +1,173 @@ +import { gunzipSync } from "node:zlib"; + +/** + * Vite plugin to enable HMR when developing against a Galaxy server. + * + * The problem: Galaxy serves HTML from Mako templates that reference production + * bundles at /static/dist/*.bundled.js. When using Vite's dev server as a proxy, + * the browser loads these production bundles instead of Vite's dev entry points, + * so HMR doesn't work. + * + * The solution: Intercept HTML responses from Galaxy and rewrite them to: + * 1. Inject Vite's HMR client script + * 2. Replace production bundle URLs with Vite dev server entry points + * 3. Remove production CSS (Vite injects CSS via JS in dev mode) + * + * This allows `GALAXY_URL=https://usegalaxy.org yarn develop` to work with + * full HMR support without any server-side changes. + */ + +/** + * Stub script to inject before any modules load. + * This creates window.config and window.bundleEntries stubs that queue + * calls until the real modules load and process them. + */ +const CONFIG_STUB_SCRIPT = ` +`; + +/** + * Transform Galaxy HTML to use Vite dev server entry points + * @param {string} html - The HTML content from Galaxy + * @returns {string} - Transformed HTML with Vite dev URLs + */ +function transformGalaxyHtml(html) { + // Inject stub config FIRST (synchronous, non-module) so it's available immediately + // Then inject Vite client for HMR + html = html.replace( + /]*)>/i, + "" + CONFIG_STUB_SCRIPT + '\n ', + ); + + // Rewrite libs.bundled.js to dev entry point + // Match script tags with or without type="module" + html = html.replace( + /]*src="[^"]*\/static\/dist\/libs\.bundled\.js[^"]*"[^>]*><\/script>/gi, + '', + ); + + // Rewrite analysis.bundled.js to dev entry point + html = html.replace( + /]*src="[^"]*\/static\/dist\/analysis\.bundled\.js[^"]*"[^>]*><\/script>/gi, + '', + ); + + // Rewrite generic.bundled.js to dev entry point + html = html.replace( + /]*src="[^"]*\/static\/dist\/generic\.bundled\.js[^"]*"[^>]*><\/script>/gi, + '', + ); + + // Remove production CSS link - Vite injects CSS via JS modules in dev mode + html = html.replace( + /]*href="[^"]*\/static\/dist\/base\.css[^"]*"[^>]*>/gi, + "", + ); + + return html; +} + +/** + * Vite plugin that transforms proxied Galaxy HTML responses for HMR support + */ +export function galaxyDevServerPlugin() { + return { + name: "galaxy-dev-server", + configureServer(server) { + // Add middleware to intercept and transform HTML responses + server.middlewares.use((req, res, next) => { + // Store original methods + const originalWrite = res.write.bind(res); + const originalEnd = res.end.bind(res); + + // Buffer to collect response body + const chunks = []; + let isHtml = false; + + // Override write to collect chunks + res.write = function (chunk, encoding, callback) { + if (chunk) { + chunks.push(Buffer.isBuffer(chunk) ? chunk : Buffer.from(chunk, encoding)); + } + // Don't write yet - we'll write in end() + if (typeof encoding === "function") { + encoding(); // encoding is actually the callback + } else if (typeof callback === "function") { + callback(); + } + return true; + }; + + // Override end to transform and send response + res.end = function (chunk, encoding, callback) { + if (chunk) { + chunks.push(Buffer.isBuffer(chunk) ? chunk : Buffer.from(chunk, encoding)); + } + + // Check content type + const contentType = res.getHeader("content-type"); + isHtml = contentType && contentType.toString().includes("text/html"); + + // Combine all chunks + let body = Buffer.concat(chunks); + + // Transform HTML responses that contain Galaxy bundles + if (isHtml) { + // Decompress gzip responses (common from remote Galaxy servers) + const contentEncoding = res.getHeader("content-encoding"); + if (contentEncoding === "gzip") { + try { + body = gunzipSync(body); + } catch (e) { + // If decompression fails, continue with original body + console.warn("[galaxy-dev-server] Failed to decompress gzip response:", e.message); + } + } + + let htmlString = body.toString("utf-8"); + if (htmlString.includes("bundled.js") || htmlString.includes("/static/dist/")) { + htmlString = transformGalaxyHtml(htmlString); + body = Buffer.from(htmlString, "utf-8"); + + // Update content-length header + res.setHeader("content-length", body.length); + + // Remove content-encoding since we've decompressed it + res.removeHeader("content-encoding"); + } + } + + // Send the response + originalWrite(body); + + if (typeof encoding === "function") { + originalEnd(encoding); // encoding is actually the callback + } else { + originalEnd(callback); + } + }; + + next(); + }); + }, + }; +} diff --git a/client/vite-plugin-galaxy-legacy.js b/client/vite-plugin-galaxy-legacy.js new file mode 100644 index 000000000000..b528fc393408 --- /dev/null +++ b/client/vite-plugin-galaxy-legacy.js @@ -0,0 +1,43 @@ +import { extensions, getViteAliases } from "./build-config.shared.js"; + +/** + * Vite plugin for Galaxy's legacy module resolution + */ +export function galaxyLegacyPlugin() { + return { + name: "vite-plugin-galaxy-legacy", + + config: () => { + const aliases = getViteAliases(); + + return { + resolve: { + alias: aliases, + extensions, + }, + + optimizeDeps: { + // Pre-bundle problematic CommonJS dependencies + include: ["store", "jquery-migrate", "underscore", "backbone"], + + // Fix CommonJS global references + esbuildOptions: { + define: { + global: "globalThis", + }, + }, + }, + }; + }, + + // Custom resolver for edge cases + resolveId(id) { + // Special handling for popper.js + if (id === "popper.js") { + return { id: "popper.js/dist/esm/popper.js", external: false }; + } + + return null; + }, + }; +} diff --git a/client/vite.config.mjs b/client/vite.config.mjs new file mode 100644 index 000000000000..a478baa616bc --- /dev/null +++ b/client/vite.config.mjs @@ -0,0 +1,181 @@ +import { dirname, resolve } from "node:path"; +import { fileURLToPath } from "node:url"; + +import ViteYaml from "@modyfi/vite-plugin-yaml"; +import inject from "@rollup/plugin-inject"; +import vue from "@vitejs/plugin-vue2"; +import { defineConfig } from "vite"; +import tsconfigPaths from "vite-tsconfig-paths"; + +import { buildMetadataPlugin } from "./vite-plugin-build-metadata.js"; +import { galaxyDevServerPlugin } from "./vite-plugin-galaxy-dev-server.js"; +import { galaxyLegacyPlugin } from "./vite-plugin-galaxy-legacy.js"; + +const __dirname = dirname(fileURLToPath(import.meta.url)); + +/** + * Plugin to fix D3 v3 ES module compatibility + * D3 v3 is an IIFE that expects `this` to be `window` at the module level. + * In ES modules, `this` is `undefined`. This plugin wraps the code to + * execute with the correct global context. + */ +function d3v3CompatPlugin() { + return { + name: "d3v3-compat", + transform(code, id) { + // Only transform the d3v3 main file + if ( + (id.includes("node_modules/d3v3/d3.js") || id.includes("node_modules\\d3v3\\d3.js")) && + code.startsWith("!function()") + ) { + // The D3 v3 code is: !function() { ... }(); + // We need to change it to: !function() { ... }.call(window); + // This ensures `this` inside the IIFE refers to `window` + const transformed = code.replace( + /\}(\s*)\(\s*\)\s*;?\s*$/, + "}.call(typeof window !== 'undefined' ? window : globalThis);", + ); + return { + code: transformed, + map: null, + }; + } + return null; + }, + }; +} + +export default defineConfig({ + // Use relative base so CSS asset references work with any proxy prefix. + // The HTML script tags use url_for() which handles the prefix correctly. + base: "./", + define: { + // Make jQuery available globally for plugins and legacy code + global: "globalThis", + // Polyfill process.env for Node.js modules (like util) that reference it + "process.env": JSON.stringify({}), + // Define build system for runtime checks + __GALAXY_BUILD_SYSTEM__: JSON.stringify("vite"), + // Define build timestamp + __buildTimestamp__: JSON.stringify(new Date().toISOString()), + }, + plugins: [ + vue({ + template: { + compilerOptions: { + // Preserve whitespace to match Webpack's vue-loader default behavior + whitespace: "preserve", + }, + }, + }), + tsconfigPaths(), // TypeScript path resolution + ViteYaml(), // YAML file support + galaxyLegacyPlugin(), // Handle legacy module resolution + buildMetadataPlugin(), // Generate build metadata (replaces DumpMetaPlugin) + d3v3CompatPlugin(), // Fix D3 v3 ES module compatibility + // Inject imports for underscore and Buffer + // jQuery is set up as window.$ and window.jQuery by libs.bundled.js + // Note: We don't inject jQuery here to avoid circular dependencies with code splitting + inject({ + include: ["**/*.js", "**/*.ts", "**/*.vue"], + exclude: ["**/node_modules/**"], + _: "underscore", + Buffer: ["buffer", "Buffer"], + }), + galaxyDevServerPlugin(), // Transform proxied Galaxy HTML for HMR support + ], + // resolve aliases are handled by galaxyLegacyPlugin + css: { + preprocessorOptions: { + scss: { + quietDeps: true, + silenceDeprecations: ["import", "color-functions", "global-builtin"], + includePaths: ["src/style", "src/style/scss", "node_modules"], + }, + }, + }, + build: { + outDir: "dist", + emptyOutDir: true, + // Generate manifest.json for production + manifest: true, + // Disable CSS code splitting - combine all CSS into one file + cssCodeSplit: false, + // Generate sourcemaps when GXY_BUILD_SOURCEMAPS is set + sourcemap: !!process.env.GXY_BUILD_SOURCEMAPS, + rollupOptions: { + input: { + // Entry points that will be referenced in templates + // libs must be loaded first - it exposes globals (jQuery, bundleEntries, config) + libs: resolve(__dirname, "src/entry/libs.js"), + analysis: resolve(__dirname, "src/entry/analysis/index.ts"), + generic: resolve(__dirname, "src/entry/generic.js"), + }, + output: { + entryFileNames: "[name].bundled.js", + chunkFileNames: "[name]-[hash].js", + // CSS should be named 'base.css' to match what templates expect + assetFileNames: (assetInfo) => { + if (assetInfo.name && assetInfo.name.endsWith(".css")) { + return "base.css"; + } + return "[name]-[hash].[ext]"; + }, + manualChunks: (id) => { + // Put jQuery in its own chunk - jquery-migrate is imported dynamically + if (id.includes("node_modules/jquery/") && !id.includes("jquery-migrate")) { + return "jquery-core"; + } + // Keep app/* files together to avoid circular dependency issues + // (getGalaxyInstance is re-exported through app/index.js) + if (id.includes("/src/app/")) { + return "galaxy-app"; + } + }, + }, + }, + }, + server: { + port: process.env.VITE_PORT || 5173, + host: "0.0.0.0", + proxy: { + // Proxy everything except Vite's own routes to Galaxy backend + "^/(?!(@|src/|node_modules/|__vite))": { + target: process.env.GALAXY_URL || "http://127.0.0.1:8080", + changeOrigin: !!process.env.CHANGE_ORIGIN, + secure: process.env.CHANGE_ORIGIN ? false : true, + }, + }, + cors: true, + hmr: { + protocol: "ws", + host: "localhost", + }, + }, + worker: { + format: "es", + }, + optimizeDeps: { + // Use esbuild plugin to fix D3 v3's IIFE `this` binding during pre-bundling + esbuildOptions: { + plugins: [ + { + name: "d3v3-compat-esbuild", + setup(build) { + build.onLoad({ filter: /node_modules\/d3v3\/d3\.js$/ }, async (args) => { + const fs = await import("node:fs"); + let contents = fs.readFileSync(args.path, "utf8"); + // D3 v3 is: !function() { ... }(); + // Change to: !function() { ... }.call(window); + contents = contents.replace( + /\}(\s*)\(\s*\)\s*;?\s*$/, + "}.call(typeof window !== 'undefined' ? window : globalThis);", + ); + return { contents, loader: "js" }; + }); + }, + }, + ], + }, + }, +}); diff --git a/client/vitest.config.mts b/client/vitest.config.mts index 3d5945eda9aa..d28f526ecc78 100644 --- a/client/vitest.config.mts +++ b/client/vitest.config.mts @@ -77,10 +77,6 @@ export default defineConfig({ // Ensure .vue files are resolved extensions: [".js", ".ts", ".json", ".vue", ".yml", ".txt"], }, - // Define global variables - define: { - __webpack_public_path__: '""', - }, // CSS handling css: { modules: { diff --git a/client/webpack.config.js b/client/webpack.config.js deleted file mode 100644 index ceb2df9fa3f5..000000000000 --- a/client/webpack.config.js +++ /dev/null @@ -1,376 +0,0 @@ -/* eslint-env node */ -const webpack = require("webpack"); -const path = require("path"); -const VueLoaderPlugin = require("vue-loader/lib/plugin"); -const MiniCssExtractPlugin = require("mini-css-extract-plugin"); -const CssMinimizerPlugin = require("css-minimizer-webpack-plugin"); -const { DumpMetaPlugin } = require("dumpmeta-webpack-plugin"); -const TsconfigPathsPlugin = require("tsconfig-paths-webpack-plugin"); -const TerserPlugin = require("terser-webpack-plugin"); -const ForkTsCheckerWebpackPlugin = require("fork-ts-checker-webpack-plugin"); -const CircularDependencyPlugin = require("circular-dependency-plugin"); -const MonacoWebpackPlugin = require("monaco-editor-webpack-plugin"); - -const scriptsBase = path.join(__dirname, "src"); -const testsBase = path.join(__dirname, "tests"); -const libsBase = path.join(scriptsBase, "libs"); -const styleBase = path.join(scriptsBase, "style"); - -const modulesExcludedFromLibs = [ - "jspdf", - "canvg", - "html2canvas", - "handsontable", - "pikaday", - "moment", - "elkjs", - "@citation-js", - "citeproc", - "vega", - "vega-embed", - "vega-lite", - "ace-builds", - "schema-to-ts", -].join("|"); - -const buildDate = new Date(); - -module.exports = (env = {}, argv = {}) => { - // environment name based on -d, -p, webpack flag - const targetEnv = process.env.NODE_ENV == "production" || argv.mode == "production" ? "production" : "development"; - // Detect if running under webpack-dev-server - const isDevServer = Boolean(process.env.WEBPACK_SERVE); - - let minimizations = {}; - if (targetEnv == "production") { - minimizations = { - minimize: true, - minimizer: [new TerserPlugin(), new CssMinimizerPlugin()], - }; - } else { - minimizations = { - minimize: false, - }; - } - - const buildconfig = { - mode: targetEnv, - entry: { - analysis: ["polyfills", "entry/analysis"], - generic: ["polyfills", "entry/generic"], - }, - output: { - path: path.join(__dirname, "dist"), - filename: "[name].bundled.js", - clean: true, - }, - resolve: { - plugins: [new TsconfigPathsPlugin({ extensions: [".ts", ".js", ".json", ".vue", ".scss"] })], - extensions: [".ts", ".js", ".json", ".vue", ".scss"], - modules: [scriptsBase, "node_modules", styleBase, testsBase], - fallback: { - timers: require.resolve("timers-browserify"), - stream: require.resolve("stream-browserify"), - "process/browser": require.resolve("process/browser"), - querystring: require.resolve("querystring-es3"), - util: require.resolve("util/"), - assert: require.resolve("assert/"), - url: false, - perf_hooks: false, - buffer: require.resolve("buffer/"), - }, - alias: { - vue$: path.resolve(__dirname, "node_modules/vue/dist/vue.esm.js"), - jquery$: `${libsBase}/jquery.custom.js`, - jqueryVendor$: `${libsBase}/jquery/jquery.js`, - storemodern$: "store/dist/store.modern.js", - "popper.js": path.resolve(__dirname, "node_modules/popper.js/"), - underscore: path.resolve(__dirname, "node_modules/underscore"), - // client-side application config - config$: path.join(scriptsBase, "config", targetEnv) + ".js", - }, - }, - optimization: { - splitChunks: { - cacheGroups: { - styles: { - name: "base", - chunks: "all", - test: (m) => m.constructor.name == "CssModule", - priority: -5, - }, - libs: { - name: "libs", - test: new RegExp(`node_modules[\\/](?!(${modulesExcludedFromLibs})[\\/])|galaxy/scripts/libs`), - chunks: "all", - priority: -10, - }, - monaco: { - test: /[\\/]node_modules[\\/]monaco-editor[\\/]/, - name: "monaco", - chunks: "all", - enforce: true, - }, - }, - }, - ...minimizations, - }, - module: { - rules: [ - { - test: /\.vue$/, - loader: "vue-loader", - }, - { - test: /\.tsx?$/, - exclude: /node_modules/, - use: [ - { - loader: "thread-loader", - // options: { workers: 2 }, - }, - { - loader: "ts-loader", - options: { - transpileOnly: true, - happyPackMode: true, // IMPORTANT! use happyPackMode mode to allow thread-loader - configFile: "tsconfig.webpack.json", - appendTsSuffixTo: [/\.vue$/], - }, - }, - ], - }, - { - test: /\.mjs$/, - include: /node_modules/, - type: "javascript/auto", - }, - { - test: `${libsBase}/jquery.custom.js`, - loader: "expose-loader", - options: { - exposes: ["$", "jQuery"], - }, - }, - { - test: require.resolve("underscore"), - use: [ - { - loader: "expose-loader", - options: { - exposes: { - globalName: ["underscore", "_"], - }, - }, - }, - ], - }, - { - test: `${scriptsBase}/onload/loadConfig.js`, - use: [ - { - loader: "expose-loader", - options: { exposes: "config" }, - }, - ], - }, - { - test: /\.css$/, - include: /monaco-editor/, - use: [ - { - loader: MiniCssExtractPlugin.loader, - options: {}, - }, - { - loader: "css-loader", - }, - { - loader: "postcss-loader", - }, - ], - }, - { - test: /\.(sa|sc|c)ss$/, - exclude: /monaco-editor/, - use: [ - { - loader: MiniCssExtractPlugin.loader, - options: {}, - }, - { - loader: "css-loader", - }, - { - loader: "postcss-loader", - }, - { - loader: "sass-loader", - options: { - sassOptions: { - quietDeps: true, - loadPaths: [ - path.join(styleBase, "scss"), - path.resolve(__dirname, "./node_modules"), - ], - }, - }, - }, - ], - }, - { - test: /\.(txt|tmpl)$/, - loader: "raw-loader", - }, - { - test: /\.ya?ml$/, - use: "yaml-loader", - }, - { - test: /\.ttf$/, - type: "asset/resource", - }, - ], - }, - resolveLoader: { - alias: { - // since we support both requirejs i18n and non-requirejs and both use a similar syntax, - // use an alias so we can just use one file - i18n: "amdi18n-loader", - }, - }, - plugins: [ - // this plugin allows using the following keys/globals in scripts (w/o req'ing them first) - // and webpack will automagically require them in the bundle for you - new webpack.ProvidePlugin({ - $: `${libsBase}/jquery.custom.js`, - jQuery: `${libsBase}/jquery.custom.js`, - "window.jQuery": `${libsBase}/jquery.custom.js`, - _: "underscore", - Backbone: "backbone", - Galaxy: ["app", "monitor"], - Buffer: ["buffer", "Buffer"], - process: "process/browser", - }), - new webpack.DefinePlugin({ - __targetEnv__: JSON.stringify(targetEnv), - __buildTimestamp__: JSON.stringify(buildDate.toISOString()), - __license__: JSON.stringify(require("./package.json").license), - }), - new webpack.DefinePlugin({ - // Define empty stubs for required modules - "node:stream": JSON.stringify({}), - "node:url": JSON.stringify({}), - }), - new VueLoaderPlugin(), - new MiniCssExtractPlugin({ - filename: "[name].css", - }), - new DumpMetaPlugin({ - filename: path.join(__dirname, "../lib/galaxy/web/framework/meta.json"), - prepare: (stats) => ({ - // add any other information you need to dump - hash: stats.hash, - epoch: Date.parse(buildDate), - }), - }), - new MonacoWebpackPlugin({ - languages: ["yaml", "javascript"], - customLanguages: [ - { - label: "yaml", - entry: "monaco-yaml", - worker: { - id: "monaco-yaml/yamlWorker", - entry: "monaco-yaml/yaml.worker", - }, - }, - { - label: "typescript", - entry: "vs/language/typescript/ts.worker", // TypeScript worker - worker: { - id: "vs/language/typescript/ts.worker", - entry: "vs/language/typescript/ts.worker", - }, - }, - ], - }), - new ForkTsCheckerWebpackPlugin({ - async: false, - typescript: { - configFile: "tsconfig.webpack.json", - diagnosticOptions: { - semantic: true, - syntactic: true, - }, - }, - }), - ], - cache: { - type: "filesystem", - buildDependencies: { - config: [__filename], - }, - // Use different cache directories for dev server vs regular build - // to prevent conflicts when switching between modes - name: isDevServer ? "dev-server" : "build", - }, - devServer: { - client: { - overlay: { - errors: true, - warnings: false, - }, - webSocketURL: { - port: process.env.GITPOD_WORKSPACE_ID ? 443 : undefined, - }, - }, - allowedHosts: process.env.GITPOD_WORKSPACE_ID ? "all" : "auto", - devMiddleware: { - publicPath: "/static/dist", - writeToDisk: true, - }, - hot: true, - port: process.env.WEBPACK_PORT || 8081, - host: "0.0.0.0", - // proxy *everything* to the galaxy server. - // someday, when we have a fully API-driven independent client, this - // can be a more limited set -- e.g. `/api`, `/auth` - proxy: [ - { - context: ["**"], - // We explicitly use ipv4 loopback instead of localhost to - // avoid ipv6/ipv4 resolution order issues; this should - // align with Galaxy's default. - target: process.env.GALAXY_URL || "http://127.0.0.1:8080", - secure: process.env.CHANGE_ORIGIN ? !process.env.CHANGE_ORIGIN : true, - changeOrigin: !!process.env.CHANGE_ORIGIN, - logLevel: "debug", - }, - ], - }, - }; - - // Only include CircularDependencyPlugin in development mode - if (targetEnv === "development" && !process.env.SKIP_CIRCULAR_DEPENDENCY_CHECK) { - buildconfig.plugins.push( - new CircularDependencyPlugin({ - // exclude detection of files based on a RegExp - exclude: /a\.js|node_modules|src\/libs/, - // add errors to webpack instead of warnings - failOnError: !!process.env.CIRCULAR_DEPENDENCY_FAIL_ON_ERROR, - // allow import cycles that include an asyncronous import, - // e.g. via import(/* webpackMode: "weak" */ './file.js') - allowAsyncCycles: false, - // set the current working directory for displaying module paths - cwd: process.cwd(), - }), - ); - } - - if (process.env.GXY_BUILD_SOURCEMAPS) { - buildconfig.devtool = "eval-cheap-module-source-map"; - } - - return buildconfig; -}; diff --git a/client/yarn.lock b/client/yarn.lock index b5f7475899c1..a9ea370b8ca0 100644 --- a/client/yarn.lock +++ b/client/yarn.lock @@ -12,22 +12,14 @@ resolved "https://registry.yarnpkg.com/@adobe/css-tools/-/css-tools-4.4.0.tgz#728c484f4e10df03d5a3acd0d8adcbbebff8ad63" integrity sha512-Ff9+ksdQQB3rMncgqDK78uLznstjyfIf2Arnh22pW8kBpLs6rpKDwgnZT46hin5Hl1WzazzK64DOrhSwYpS7bQ== -"@ampproject/remapping@^2.2.0": - version "2.2.1" - resolved "https://registry.yarnpkg.com/@ampproject/remapping/-/remapping-2.2.1.tgz#99e8e11851128b8702cd57c33684f1d0f260b630" - 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version "1.9.1" - resolved "https://registry.npmjs.org/vue-template-es2015-compiler/-/vue-template-es2015-compiler-1.9.1.tgz" - integrity sha512-4gDntzrifFnCEvyoO8PqyJDmguXgVPxKiIxrBKjIowvL9l+N66196+72XVYR8BBf1Uv1Fgt3bGevJ+sEmxfZzw== - vue-tsc@2.2.12: version "2.2.12" resolved "https://registry.yarnpkg.com/vue-tsc/-/vue-tsc-2.2.12.tgz#5f719b08ef7390a763c1a20169ca5c9d09d55688" @@ -11533,178 +7817,11 @@ vuedraggable@^2.24.3: dependencies: sortablejs "1.10.2" -watchpack@^2.4.1: - version "2.4.2" - resolved "https://registry.yarnpkg.com/watchpack/-/watchpack-2.4.2.tgz#2feeaed67412e7c33184e5a79ca738fbd38564da" - integrity sha512-TnbFSbcOCcDgjZ4piURLCbJ3nJhznVh9kw6F6iokjiFPl8ONxe9A6nMDVXDiNbrSfLILs6vB07F7wLBrwPYzJw== - dependencies: - glob-to-regexp "^0.4.1" - graceful-fs "^4.1.2" - -wbuf@^1.1.0, wbuf@^1.7.3: - version "1.7.3" - resolved "https://registry.npmjs.org/wbuf/-/wbuf-1.7.3.tgz" - integrity sha512-O84QOnr0icsbFGLS0O3bI5FswxzRr8/gHwWkDlQFskhSPryQXvrTMxjxGP4+iWYoauLoBvfDpkrOauZ+0iZpDA== - 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integrity sha512-CNqKBRMQjwcmKR0idID5va1qlhrqVUKpovi+Ec79ksW8ux7iS1+A6VqzfZXgVYCFRKl7XL5ap3ZoMpwBJxcg0w== - dependencies: - "@types/eslint-scope" "^3.7.7" - "@types/estree" "^1.0.6" - "@types/json-schema" "^7.0.15" - "@webassemblyjs/ast" "^1.14.1" - "@webassemblyjs/wasm-edit" "^1.14.1" - "@webassemblyjs/wasm-parser" "^1.14.1" - acorn "^8.14.0" - browserslist "^4.24.0" - chrome-trace-event "^1.0.2" - enhanced-resolve "^5.17.1" - es-module-lexer "^1.2.1" - eslint-scope "5.1.1" - events "^3.2.0" - glob-to-regexp "^0.4.1" - graceful-fs "^4.2.11" - json-parse-even-better-errors "^2.3.1" - loader-runner "^4.2.0" - mime-types "^2.1.27" - neo-async "^2.6.2" - schema-utils "^4.3.2" - tapable "^2.1.1" - terser-webpack-plugin "^5.3.11" - watchpack "^2.4.1" - webpack-sources "^3.2.3" - -websocket-driver@>=0.5.1, websocket-driver@^0.7.4: - version "0.7.4" - resolved "https://registry.npmjs.org/websocket-driver/-/websocket-driver-0.7.4.tgz" - integrity sha512-b17KeDIQVjvb0ssuSDF2cYXSg2iztliJ4B9WdsuB6J952qCPKmnVq4DyW5motImXHDC1cBT/1UezrJVsKw5zjg== - dependencies: - http-parser-js ">=0.5.1" - safe-buffer ">=5.1.0" - websocket-extensions ">=0.1.1" - -websocket-extensions@>=0.1.1: - version "0.1.4" - resolved "https://registry.npmjs.org/websocket-extensions/-/websocket-extensions-0.1.4.tgz" - integrity sha512-OqedPIGOfsDlo31UNwYbCFMSaO9m9G/0faIHj5/dZFDMFqPTcx6UwqyOy3COEaEOg/9VsGIpdqn62W5KhoKSpg== - whatwg-mimetype@^3.0.0: version "3.0.0" resolved "https://registry.yarnpkg.com/whatwg-mimetype/-/whatwg-mimetype-3.0.0.tgz#5fa1a7623867ff1af6ca3dc72ad6b8a4208beba7" @@ -11774,11 +7891,6 @@ why-is-node-running@^2.3.0: siginfo "^2.0.0" stackback "0.0.2" -wildcard@^2.0.1: - version "2.0.1" - resolved "https://registry.yarnpkg.com/wildcard/-/wildcard-2.0.1.tgz#5ab10d02487198954836b6349f74fff961e10f67" - integrity sha512-CC1bOL87PIWSBhDcTrdeLo6eGT7mCFtrg0uIJtqJUFyK+eJnzl8A1niH56uu7KMa5XFrtiV+AQuHO3n7DsHnLQ== - winbox@^0.2.82: version "0.2.82" resolved "https://registry.yarnpkg.com/winbox/-/winbox-0.2.82.tgz#915e0a4591cefcb3df6aab83ea2006e8da0804f9" @@ -11825,11 +7937,6 @@ wrappy@1: resolved "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz" integrity sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ== -ws@^8.18.0: - version "8.18.2" - resolved "https://registry.yarnpkg.com/ws/-/ws-8.18.2.tgz#42738b2be57ced85f46154320aabb51ab003705a" - integrity sha512-DMricUmwGZUVr++AEAe2uiVM7UoO9MAVZMDu05UQOaUII0lp+zOzLLU4Xqh/JvTqklB1T4uELaaPBKyjE1r4fQ== - xml-beautifier@^0.5.0: version "0.5.0" resolved "https://registry.npmjs.org/xml-beautifier/-/xml-beautifier-0.5.0.tgz" @@ -11872,11 +7979,6 @@ yallist@^2.1.2: resolved "https://registry.npmjs.org/yallist/-/yallist-2.1.2.tgz" integrity sha512-ncTzHV7NvsQZkYe1DW7cbDLm0YpzHmZF5r/iyP3ZnQtMiJ+pjzisCiMNI+Sj+xQF5pXhSHxSB3uDbsBTzY/c2A== -yallist@^3.0.2: - version "3.1.1" - resolved "https://registry.yarnpkg.com/yallist/-/yallist-3.1.1.tgz#dbb7daf9bfd8bac9ab45ebf602b8cbad0d5d08fd" - integrity sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g== - yallist@^4.0.0: version "4.0.0" resolved "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz" @@ -11887,15 +7989,6 @@ yaml-ast-parser@0.0.43: resolved "https://registry.yarnpkg.com/yaml-ast-parser/-/yaml-ast-parser-0.0.43.tgz#e8a23e6fb4c38076ab92995c5dca33f3d3d7c9bb" integrity sha512-2PTINUwsRqSd+s8XxKaJWQlUuEMHJQyEuh2edBbW8KNJz0SJPwUSD2zRWqezFEdN7IzAgeuYHFUCF7o8zRdZ0A== -yaml-loader@^0.8.1: - version "0.8.1" - resolved "https://registry.yarnpkg.com/yaml-loader/-/yaml-loader-0.8.1.tgz#034f901147073cfc307cdcce8bd44c1547e60ba1" - integrity sha512-BCEndnUoi3BaZmePkwGGe93txRxLgMhBa/gE725v1/GHnura8QvNs7c4+4C1yyhhKoj3Dg63M7IqhA++15j6ww== - dependencies: - javascript-stringify "^2.0.1" - loader-utils "^2.0.0" - yaml "^2.0.0" - yaml@^2.0.0: version "2.3.4" resolved "https://registry.yarnpkg.com/yaml/-/yaml-2.3.4.tgz#53fc1d514be80aabf386dc6001eb29bf3b7523b2" diff --git a/lib/galaxy/web/framework/helpers/__init__.py b/lib/galaxy/web/framework/helpers/__init__.py index f6f90bc54820..8dec0bdffb4c 100644 --- a/lib/galaxy/web/framework/helpers/__init__.py +++ b/lib/galaxy/web/framework/helpers/__init__.py @@ -93,10 +93,14 @@ def js_helper(prefix, *args): def dist_js(*args): """ - Take a prefix and list of javascript names and return appropriate - string of script tags. - """ - return js_helper("static/dist/", *args) + Generate ES module script tags for bundled JavaScript files. + These are loaded as ES modules since Vite outputs ES module format. + """ + tags = [] + for name in args: + url = url_for(f"/static/dist/{name}.js?v={server_starttime}") + tags.append(f'') + return "\n".join(tags) def is_true(val): diff --git a/lib/galaxy_test/selenium/test_custom_tools.py b/lib/galaxy_test/selenium/test_custom_tools.py index 4556587f1f43..a0ef8cc84da6 100644 --- a/lib/galaxy_test/selenium/test_custom_tools.py +++ b/lib/galaxy_test/selenium/test_custom_tools.py @@ -98,12 +98,13 @@ def paste_tool(self): """ "" ) - # Try finding Monaco editor textarea and replace skeleton content - self.sleep_for(self.wait_types.UX_RENDER) # Allow editor to focus - editor = self.wait_for_selector_visible(".monaco-editor div.view-line") + # Try finding Monaco editor and replace skeleton content + self.sleep_for(self.wait_types.UX_RENDER) # Allow editor to initialize + # Use the stable .monaco-editor container, not .view-line which gets re-rendered + editor_container = self.wait_for_selector_visible(".monaco-editor") - # Focus the editor first - editor.click() + # Focus the editor by clicking on the stable container + editor_container.click() self.sleep_for(self.wait_types.UX_RENDER) # Allow editor to focus is_mac = platform.system() == "Darwin"