Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •11•27•19•1•Updated Jul 9, 2025Jul 9, 2025

• hubsingest

  Public
  Scripts to facilitate ingestion at temporary endpoints for data targeting the Bioconductor Hubs

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •41•27•15•13•Updated Jul 9, 2025Jul 9, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •27•9•9•0•Updated Jul 9, 2025Jul 9, 2025

• code.bioconductor.org

  Public
  Tools for browsing and searching the code behind Bioconductor packages

  code-searchbioconductorr-packages

  CSS

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• BiocBaseUtils

  Public
  bioconductor-packagecore-package

  R

  •1•4•1•0•Updated Jul 8, 2025Jul 8, 2025

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•25•1•Updated Jul 8, 2025Jul 8, 2025

• CSAMA-labs

  Public
  laboratory materials for the Bressanone course

  HTML

  •5•1•1•1•Updated Jul 8, 2025Jul 8, 2025

• Bioc.gff

  Public
  Read and write GFF and GTF files

  R

  •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

• BiocCertificate

  Public
  R

  •2•0•0•0•Updated Jul 7, 2025Jul 7, 2025

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •38•14•6•3•Updated Jul 7, 2025Jul 7, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Dockerfile

  •

  Artistic License 2.0

  •32•82•16•4•Updated Jul 7, 2025Jul 7, 2025

• isee.bioconductor.org

  Public
  Source control for configuration specific to isee.bioconductor.org

  MIT License

  •1•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• BiocHubsShiny

  Public
  R

  •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•33•5•0•Updated Jun 30, 2025Jun 30, 2025

• BiocWorkingGroups

  Public
  Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

  communitybookworking-group+ 2bioconductorguidelines

  TeX

  •12•9•0•0•Updated Jun 30, 2025Jun 30, 2025

• workshop-contributions

  Public
  Repository for managing contributions to workshop.bioconductor.org

  HTML

  •0•5•4•0•Updated Jun 27, 2025Jun 27, 2025

• BuildABiocWorkshop

  Public template
  Template for building a bioconductor workshop package using github actions

  bioconductorbioconductor-workshop-package

  Dockerfile

  •

  Other

  •26•20•3•1•Updated Jun 26, 2025Jun 26, 2025

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •89•125•7•0•Updated Jun 25, 2025Jun 25, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •26•49•7•0•Updated Jun 24, 2025Jun 24, 2025

• gbcc2025

  Public
  CSS

  •

  MIT License

  •6•0•0•1•Updated Jun 24, 2025Jun 24, 2025

• Organism.dplyr

  Public
  bioconductor-packagecore-package

  R

  •3•3•8•0•Updated Jun 23, 2025Jun 23, 2025

• OrganismDbi

  Public
  Software to enable the smooth interfacing of different database packages

  bioconductor-packagecore-package

  R

  •2•0•2•0•Updated Jun 23, 2025Jun 23, 2025

• txdbmaker

  Public
  A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

  bioconductor-packagecore-package

  R

  •1•3•6•0•Updated Jun 23, 2025Jun 23, 2025

• GenomicRanges

  Public
  Representation and manipulation of genomic intervals

  bioconductor-packagecore-package

  R

  •19•46•27•4•Updated Jun 21, 2025Jun 21, 2025

• Seqinfo

  Public
  A simple S4 class for storing basic information about a collection of genomic sequences

  R

  •0•1•1•0•Updated Jun 21, 2025Jun 21, 2025

• RaggedExperiment

  Public
  Matrix-like representations of mutation and CN data

  data-structuremutationscopynumber+ 2core-packageu24ca289073

  R

  •4•4•3•0•Updated Jun 21, 2025Jun 21, 2025

• AnnotationHubData

  Public
  Transform public data resources into Bioconductor Data Structures

  core-package

  R

  •6•0•2•3•Updated Jun 21, 2025Jun 21, 2025

• BSgenomeForge

  Public
  Forge your own BSgenome data package

  bioconductor-packagecore-package

  R

  •3•4•3•0•Updated Jun 21, 2025Jun 21, 2025