Repositories list

• imagej.github.io

  Public
  The ImageJ wiki

  JavaScript

  •

  Other

  •178178 forks•2828 stars•6161 issues•44 pull requests•Updated Apr 10, 2026Apr 10, 2026

• imagej-legacy

  Public
  ImageJ+ImageJ2 compatibility layer

  Java

  •

  BSD 2-Clause "Simplified" License

  •2727 forks•1717 stars•9797 issues•1313 pull requests•Updated Apr 2, 2026Apr 2, 2026

• ImageJ

  Public
  Public domain software for processing and analyzing scientific images

  computer-visionimage-processing

  computer-visionimage-processing

  Java

  •

  Other

  •256256 forks•747747 stars•7676 issues•88 pull requests•Updated Mar 28, 2026Mar 28, 2026

• list-of-update-sites

  Public
  The update sites ImageJ2 knows about automatically

  Python

  •105105 forks•66 stars•11 issue•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• pyimagej

  Public
  Use ImageJ from Python

  Python

  •

  Other

  •9393 forks•529529 stars•5252 issues•44 pull requests•Updated Mar 16, 2026Mar 16, 2026

• ij1-patcher

  Public
  Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

  Java

  •

  BSD 2-Clause "Simplified" License

  •66 forks•55 stars•88 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• napari-imagej

  Public
  Use ImageJ functionality from napari

  pythonjavaimagej+ 2

  pythonjavaimagejfijinapari

  Python

  •

  BSD 2-Clause "Simplified" License

  •55 forks•3434 stars•4242 issues•11 pull request•Updated Jan 2, 2026Jan 2, 2026

• imagej-updater

  Public
  The automatic updater for ImageJ

  Java

  •

  Other

  •1515 forks•1212 stars•5656 issues•44 pull requests•Updated Nov 12, 2025Nov 12, 2025

• imagej-scripting

  Public
  ImageJ-specific applications of the SciJava script languages

  Python

  •

  Other

  •1515 forks•2727 stars•77 issues•00 pull requests•Updated Oct 22, 2025Oct 22, 2025

• imagej-tensorflow

  Public
  ImageJ/TensorFlow integration library

  Java

  •

  Other

  •1515 forks•2626 stars•88 issues•11 pull request•Updated Oct 1, 2025Oct 1, 2025

• imagej2

  Public
  Open scientific N-dimensional image processing :microscope: :sparkler:

  computer-visionimage-processing

  computer-visionimage-processing

  Java

  •

  BSD 2-Clause "Simplified" License

  •342342 forks•1.4k1.4k stars•132132 issues•11 pull request•Updated Aug 12, 2025Aug 12, 2025

• imagej-ui-swing

  Public
  ImageJ UI for Java Swing.

  Java

  •

  BSD 2-Clause "Simplified" License

  •2020 forks•1111 stars•3333 issues•44 pull requests•Updated Aug 4, 2025Aug 4, 2025

• .github

  Public
  ImageJ organization profile

  The Unlicense

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• imagej-matlab

  Public
  MATLAB integration with ImageJ data structures and runtime.

  Java

  •

  BSD 2-Clause "Simplified" License

  •66 forks•1616 stars•1818 issues•00 pull requests•Updated Feb 4, 2025Feb 4, 2025

• dotfiles

  Public
  Configuration files for ImageJ resources

  11 fork•22 stars•00 issues•00 pull requests•Updated Nov 27, 2024Nov 27, 2024

• search

  Public
  ImageJ search portal

  HTML

  •22 forks•11 star•22 issues•00 pull requests•Updated Nov 19, 2024Nov 19, 2024

• imagej-plugins-commands

  Public
  Core ImageJ commands

  Java

  •

  Other

  •77 forks•55 stars•1919 issues•00 pull requests•Updated Nov 7, 2024Nov 7, 2024

• imagej-opencv

  Public
  Convert between OpenCV and ImgLib2 data structures

  Java

  •

  BSD 2-Clause "Simplified" License

  •44 forks•33 stars•44 issues•00 pull requests•Updated Nov 7, 2024Nov 7, 2024

• workshops

  Public
  ImageJ Workshops

  HTML

  •33 forks•44 stars•00 issues•00 pull requests•Updated Oct 30, 2024Oct 30, 2024

• imagej-launcher

  Public
  The ImageJ native launcher

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks•2424 stars•33 issues•11 pull request•Updated Oct 11, 2024Oct 11, 2024

• imagej-mesh

  Public
  [DEPRECATED] use https://github.com/imglib/imglib2-mesh instead

  Java

  •

  Other

  •44 forks•66 stars•77 issues•22 pull requests•Updated Aug 29, 2024Aug 29, 2024

• imagej-ops

  Public
  ImageJ Ops: "Write once, run anywhere" image processing

  Java

  •

  BSD 2-Clause "Simplified" License

  •4343 forks•9393 stars•160160 issues•1616 pull requests•Updated Aug 29, 2024Aug 29, 2024

• imagej-common

  Public
  ImageJ core data model

  Java

  •

  BSD 2-Clause "Simplified" License

  •1515 forks•1010 stars•6161 issues•00 pull requests•Updated Aug 28, 2024Aug 28, 2024

• example-imagej2-command-kotlin

  Public template
  An ImageJ2 command that mixes Kotlin and Java code

  Kotlin

  •

  BSD 2-Clause "Simplified" License

  •22 forks•55 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• imagej-omero

  Public
  Server- and client-side communication between ImageJ and OMERO

  Java

  •

  GNU General Public License v2.0

  •1111 forks•1212 stars•5252 issues•00 pull requests•Updated Oct 5, 2023Oct 5, 2023

• imagej-omero-legacy

  Public
  ImageJ 1.x support for ImageJ-OMERO

  Java

  •

  GNU General Public License v2.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 11, 2023Jul 11, 2023

• imagej-mesh-io

  Public
  I/O plugins for ImageJ meshes and related data structures

  Java

  •

  Other

  •11 fork•22 stars•11 issue•00 pull requests•Updated May 26, 2023May 26, 2023

• imagej-deprecated

  Public
  Deprecated ImageJ packages

  Java

  •

  BSD 2-Clause "Simplified" License

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 21, 2023Apr 21, 2023

• imagej-node

  Public
  ImageJ module for node.js

  JavaScript

  •

  The Unlicense

  •33 forks•88 stars•00 issues•00 pull requests•Updated Apr 12, 2023Apr 12, 2023

• imagej-electron-app

  Public
  [EXPERIMENTAL] Electron app embedding ImageJ + JS image visualization tools

  JavaScript

  •

  MIT License

  •33 forks•99 stars•00 issues•00 pull requests•Updated Apr 12, 2023Apr 12, 2023