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CIS Hardened Image Level 1 on Amazon Linux 2 Kernel 5.10

-[priority] Medium[priority] Medium

debt[type] A defect incurring continued engineering cost[type] A defect incurring continued engineering cost

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

orange[process] Done by the Azul team[process] Done by the Azul team

spike:3[process] Spike estimate of three points[process] Spike estimate of three points

Status: Open.

Feature

#7261 In DataBiosphere/azul;

· hannes-ucsc opened on Jul 8, 2025

Index dcp51 in prod

-[priority] Medium[priority] Medium

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

no demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint

operator[process] To be addressed by whoever is operator[process] To be addressed by whoever is operator

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Feature

#7260 In DataBiosphere/azul;

· bvizzier-ucsc opened on Jul 8, 2025

Promotion 2025-07-08

-[priority] Medium[priority] Medium

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

no demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint

operator[process] To be addressed by whoever is operator[process] To be addressed by whoever is operator

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Feature

#7259 In DataBiosphere/azul;

· azul-group opened on Jul 8, 2025

Upgrade dependencies 2025-07-07

debt[type] A defect incurring continued engineering cost[type] A defect incurring continued engineering cost

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

operator[process] To be addressed by whoever is operator[process] To be addressed by whoever is operator

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Task

#7257 In DataBiosphere/azul;

· azul-group opened on Jul 7, 2025

Add snapshot IDs to PFB export

-[priority] Medium[priority] Medium

manifests[subject] Generation and contents of manifests[subject] Generation and contents of manifests

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

#7254 In DataBiosphere/azul;

· bvizzier-ucsc opened on Jun 30, 2025

Apply Amazon OpenSearch (ES) Software Update 2025-06-30

-[priority] Medium[priority] Medium

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

no demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint

operator[process] To be addressed by whoever is operator[process] To be addressed by whoever is operator

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Task

#7250 In DataBiosphere/azul;

· azul-group opened on Jun 30, 2025

Missing DUOS registration may cause IT failures

-[priority] Medium[priority] Medium

orange[process] Done by the Azul team[process] Done by the Azul team

spike:1[process] Spike estimate of one point[process] Spike estimate of one point

test[subject] Unit and integration test code[subject] Unit and integration test code

Status: Open.

Bug

#7248 In DataBiosphere/azul;

· hannes-ucsc opened on Jun 27, 2025

LungMAP prod snapshot trips content type assertion

+[priority] High[priority] High

indexer[subject] The indexer part of Azul[subject] The indexer part of Azul

mirror[subject] Code and infrastructure for mirroring data files[subject] Code and infrastructure for mirroring data files

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Bug

#7244 In DataBiosphere/azul;

· hannes-ucsc opened on Jun 26, 2025

Two AnVIL snapshots with null in anvil_file.file_size column

-[priority] Medium[priority] Medium

data[subject] Data or metadata [use of this label is uncommon][subject] Data or metadata [use of this label is uncommon]

orange[process] Done by the Azul team[process] Done by the Azul team

workaround[type] An enhancement that works around a defect of an external dependency[type] An enhancement that works around a defect of an external dependency

Status: Open.

Bug

#7243 In DataBiosphere/azul;

· achave11-ucsc opened on Jun 26, 2025

Deprecation of pkg_resources

-[priority] Medium[priority] Medium

debt[type] A defect incurring continued engineering cost[type] A defect incurring continued engineering cost

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Bug

#7242 In DataBiosphere/azul;

· hannes-ucsc opened on Jun 25, 2025

Upgrade dependencies 2025-06-23

-[priority] Medium[priority] Medium

debt[type] A defect incurring continued engineering cost[type] A defect incurring continued engineering cost

infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scripts

no demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint

operator[process] To be addressed by whoever is operator[process] To be addressed by whoever is operator

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Feature

#7237 In DataBiosphere/azul;

· azul-group opened on Jun 23, 2025

DUOS requests time out in anvilprod

+[priority] High[priority] High

data[subject] Data or metadata [use of this label is uncommon][subject] Data or metadata [use of this label is uncommon]

no demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint

orange[process] Done by the Azul team[process] Done by the Azul team

Status: Open.

Bug

#7230 In DataBiosphere/azul;

· achave11-ucsc opened on Jun 17, 2025