V1.3.0 #61
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V1.3.0 #61
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…mber Bugfix: read batch input in autoxai4omics.sh
* Changed: Eli5 & scikit learn bump * Changed: converted print statements to logger and send logging to stdout * Fixed: missed loggers statement * Changed: upgraded `xgboost` and `shap` to latest version * Updated: Changelog * Changed: upgraded eli5
* Changed: updated gitignore * Changed: tweaked config duplication naming * Changed: renamed `src` to `autoxai4omics` * Added: initial pyproject.toml and lock file * Change: prelim docker image update * Changed: added platform specific dependencies * Changed: updated dockerfile * Changed: updated dev manual * Removed: removed depricated requirements txt * Changed: updated changelog * Changed: Author name
* Changed: updated python version in dockerfile * Changed: required package changes for python 3.11
* Fixed: correct pull command statement * Fixed: corrected dev manual link * Fixed: updated doi * Added: warning about version to use with published data & configs * Removed: biorxiv doi
* Changed: dockerfile to install only main * Removed: unneeded packages * Changed: updated non-root requirements * fix: fixes for updating non-root requirements * changed: streamlined imports * added: tests for `variance_removal` * security: package updates * Changed: updated pydantic * changed: updated bio packages * fix: path printing error * Changed: loosened limits on package version already at max * Changed: updated lightgbm * fixed: changelog version * change: changelog update
* Added: extra & missing cicd packages * - Changed: updated pre-commit-config & fix: correct file permissions * fix: cicd to build image and push to the `ghcr.io` * bugfix: missing keyword * Add: added allowance for development branch * Fixes * Changed: removed condition * fixed: branch ref * remove: removed development branch specifics * Readme update
* changed: simplified docker build workflow * added: release on main workflow
* Added: annotations contain descriptions for fields * Added: exported model schema
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