About the input Fastq format data

[liujiaxin7]

Hello, I have a question. Each of my samples has two FASTQ files: read1 and read2. How should I prepare the input files?
I dealed with the fastq data：cat read1 read2 > sample_name_NC_001941.1.fq
My comand is like this : mia -f sample_name_NC_001941.1.fq -r NC_001941.1.fna -m sample_name -F -c -i
Is it right?
Thank you very much！