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Structure 7BZ5
- I used Select by Distance to identify amino acids that are in the epitope. I chose the H and L chains in the first set and the spike protein in the second set.
- Opened Select > Save selection and named the selected residues "epitope"
- Opened Analysis > Interactions
- Deselected all interactions except for Hydrogen bonds, Salt bridges, and pi stacking.
- Chose 3D Display Interactions.
- Chose 2D Interaction map.
- Clicked the data point for the salt bridge (K471 and E98).
- Open View > View Selection.
- Opened Style > Protein > Ball and Stick.
Expectation: I expected that the amino acids would be shown with a Ball and Stick drawing style.
Result: The amino acids are shown with a drawing style that is not Ball and Stick.
As a general rule, I think, whenever something has been selected, the change in style or color should be applied to the selected item.
