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Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

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sunbeam sunbeam Public

A robust, extensible metagenomics pipeline

Python 171 43
sbx_template sbx_template Public template

Template for Sunbeam extensions.

Python 3 2

Repositories

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Showing 10 of 33 repositories

sunbeam Public
A robust, extensible metagenomics pipeline

sunbeam-labs/sunbeam’s past year of commit activity

Python 171 43 12 6 Updated Jul 8, 2025
sbx_sga Public
A Sunbeam extension for Single Genome Assembly

sunbeam-labs/sbx_sga’s past year of commit activity

Python 0 3 5 3 Updated Jul 7, 2025
sbx_shotgun_unifrac Public
Sunbeam extension for assigning metagenomic reads to a full bacterial phylogeny

sunbeam-labs/sbx_shotgun_unifrac’s past year of commit activity

Python 0 0 2 2 Updated Jul 7, 2025
sbx_template Public template
Template for Sunbeam extensions.

sunbeam-labs/sbx_template’s past year of commit activity

Python 3 2 0 2 Updated Jul 7, 2025
sbx_coassembly Public
Sunbeam extension to co-assemble metagenomic reads using Megahit

sunbeam-labs/sbx_coassembly’s past year of commit activity

Python 0 2 1 1 Updated Jul 7, 2025
sbx_kraken Public
Extension for running kraken2 and kraken2-biom

sunbeam-labs/sbx_kraken’s past year of commit activity

Python 0 1 1 1 Updated Jul 7, 2025
sbx_mapping Public
Extension to map reads against a set of reference genomes

sunbeam-labs/sbx_mapping’s past year of commit activity

Python 0 1 0 1 Updated Jul 7, 2025
sbx_assembly Public
Sunbeam extension for assembly (megahit) and annotation (prodigal)

sunbeam-labs/sbx_assembly’s past year of commit activity

Python 0 0 0 1 Updated Jul 7, 2025
sbx_test_action Public
GH Action for testing sunbeam extensions

sunbeam-labs/sbx_test_action’s past year of commit activity

0 0 0 0 Updated Jul 2, 2025
sbx_gene_clusters Public

sunbeam-labs/sbx_gene_clusters’s past year of commit activity

Python 2 5 1 2 Updated Jun 30, 2025

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