Update README.md #20
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| name: rworkflows | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| jobs: | |
| rworkflows: | |
| permissions: write-all | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| container: ${{ matrix.config.cont }} | |
| strategy: | |
| fail-fast: ${{ false }} | |
| matrix: | |
| config: | |
| - os: ubuntu-latest | |
| bioc: devel | |
| r: auto | |
| cont: ghcr.io/bioconductor/bioconductor_docker:devel | |
| rspm: ~ | |
| - os: macOS-latest | |
| bioc: release | |
| r: auto | |
| cont: ~ | |
| rspm: ~ | |
| - os: windows-latest | |
| bioc: release | |
| r: auto | |
| cont: ~ | |
| rspm: ~ | |
| steps: | |
| - uses: neurogenomics/rworkflows@master | |
| with: | |
| run_bioccheck: ${{ false }} | |
| run_rcmdcheck: ${{ true }} | |
| as_cran: ${{ true }} | |
| run_vignettes: ${{ true }} | |
| has_testthat: ${{ true }} | |
| run_covr: ${{ true }} | |
| run_pkgdown: ${{ true }} | |
| has_runit: ${{ false }} | |
| has_latex: ${{ false }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run_docker: ${{ false }} | |
| DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
| runner_os: ${{ runner.os }} | |
| cache_version: cache-v1 | |
| docker_registry: ghcr.io | |
| docker-build-and-push: | |
| #needs: r-build-and-check | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| # This is used to complete the identity challenge | |
| # with sigstore/fulcio when running outside of PRs. | |
| id-token: write | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Set Environment Variables | |
| run: | | |
| REPO_LOWER="$(echo "${{ github.repository }}" | tr '[:upper:]' '[:lower:]')" | |
| REGISTRY=ghcr.io | |
| echo "BUILD_DATE=$(date +'%Y-%m-%d %H:%M:%S')" >> $GITHUB_ENV | |
| echo "GIT_SHA=$(echo ${{ github.sha }} | cut -c1-7)" >> $GITHUB_ENV | |
| echo "REGISTRY=${REGISTRY}" >> $GITHUB_ENV | |
| echo "IMAGE=${REGISTRY}/${REPO_LOWER}" >> $GITHUB_ENV | |
| - name: Show environment | |
| run: | | |
| env | |
| # Install the cosign tool except on PR | |
| # https://github.com/sigstore/cosign-installer | |
| - name: Install cosign | |
| if: github.event_name != 'pull_request' | |
| uses: sigstore/cosign-installer@v3 | |
| - name: Setup Docker buildx | |
| uses: docker/setup-buildx-action@v3 | |
| # Login against a Docker registry except on PR | |
| # https://github.com/docker/login-action | |
| - name: Log into registry ${{ env.REGISTRY }} | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.IMAGE }} | |
| # Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: | | |
| ${{ env.IMAGE }}:latest | |
| ${{ env.IMAGE }}:${{ env.GIT_SHA }} |