[26.0] Add optional dataset collection mode to harmonize tool#22236
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mvdbeek merged 2 commits intogalaxyproject:release_26.0from Mar 31, 2026
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What is the policy regarding tools? Can this be included in 26.0? |
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When input2 is not provided, the tool produces: - output1: a copy of input1 (all elements preserved) - output2: same structure/identifiers as input1 but with expression.json null datasets This enables workflows to use the harmonize tool with optional inputs, producing null-filled collections that can be filtered downstream with the Filter Null tool. Bumps tool version to 1.1.0 and preserves 1.0.0 XML as backup. Closes galaxyproject#22080
Override check_inputs_ready to skip the input2 key when the optional collection is not provided, before delegating to the base class which rightfully assumes all collection inputs are present.
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When input2 is not provided, the tool produces:
This enables workflows to use the harmonize tool with optional inputs, producing null-filled collections that can be filtered downstream with the Filter Null tool.
Bumps tool version to 1.1.0 and preserves 1.0.0 XML as backup. Closes #22080
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