Update versions of dependencies & regenerate envs/*.txt files

dev_tools/conf/mypy.ini

@@ -1,16 +1,25 @@
 [mypy]
+implicit_optional = True
+
+# TODO: this is temporary for 1.7.0 release. Remove this & fix the errors.
+ignore_errors = True
 
 [mypy-__main__]
 follow_imports = silent
-ignore_missing_imports = true
+ignore_missing_imports = True
 
 # 3rd-party libs for which we don't have stubs
-[mypy-apiclient.*,numpy.*,pytest.*,scipy.*,,setuptools.*,_pytest.*]
+[mypy-apiclient.*,numpy.*,pytest.*,scipy.*,,_pytest.*,h5py,pyscf.*,pubchempy,pybtas,absl,tensorflow_docs]
 follow_imports = silent
-ignore_missing_imports = true
+ignore_missing_imports = True
 
-# Adding "sympy.* or mypy-sympy to the above list (3rd-party libs for which we don't have stubs) doesn't ignore "cannot find module 'sympy' error
+# Adding "sympy.* or mypy-sympy to the above list (3rd-party libs for which we
+# don't have stubs) doesn't ignore "cannot find module 'sympy' error
 [mypy-sympy.*]
 ignore_missing_imports = True
 
+[mypy-tensorflow_docs.*]
+ignore_missing_imports = True
 
+[mypy-deprecation]
+follow_untyped_imports = True

dev_tools/requirements/deps/format.txt

@@ -1,2 +1,2 @@
 # Make sure this matches cirq/dev_tools/requirements/deps/format.txt
-black==24.3.0
+black

dev_tools/requirements/deps/mypy.txt

@@ -1 +1,6 @@
-mypy~=0.782.0
+mypy
+
+pandas-stubs
+types-requests
+types-setuptools
+types-networkx

dev_tools/requirements/deps/pip-tools.txt

@@ -1 +1 @@
-pip-tools>=7.0
+pip-tools

dev_tools/requirements/deps/pylint.txt

@@ -1,2 +1,5 @@
-pylint~=2.15.6
+pylint~=3.3
+
+-r resource_estimates_runtime.txt
+-r pytest.txt
 

dev_tools/requirements/deps/resource_estimates_runtime.txt

@@ -1,4 +1,4 @@
 pyscf
-jax
-jaxlib
-ase
+jax~=0.4.38
+jaxlib~=0.4.38
+ase

dev_tools/requirements/deps/runtime.txt

@@ -1,11 +1,11 @@
-cirq-core~=1.0
+cirq-core
 deprecation
-h5py>=2.8
+h5py>=3.10.0
 networkx
-numpy>=1.11.0
+numpy>=1.24,<2.0
 pubchempy
-requests>=2.18
+requests~=2.32.2
 
-scipy>=1.1.0
+scipy>=1.10,<1.14
 
 sympy

dev_tools/requirements/envs/dev.env.txt

@@ -4,97 +4,98 @@
 #
 #    pip-compile --output-file=envs/dev.env.txt deps/format.txt deps/mypy.txt deps/pip-tools.txt deps/pylint.txt deps/pytest.txt deps/resource_estimates_runtime.txt deps/runtime.txt
 #
-ase==3.22.1
+ase==3.24.0
     # via -r deps/resource_estimates_runtime.txt
-astroid==2.13.5
+astroid==3.3.8
     # via pylint
-attrs==23.2.0
+attrs==25.1.0
     # via
+    #   cirq-core
     #   jsonschema
     #   referencing
-black==23.3.0
+black==25.1.0
     # via -r deps/format.txt
-build==1.0.3
+build==1.2.2.post1
     # via pip-tools
-certifi==2024.7.4
+certifi==2025.1.31
     # via requests
-charset-normalizer==3.3.2
+charset-normalizer==3.4.1
     # via requests
-cirq-core==1.3.0
+cirq-core==1.4.1
     # via -r deps/runtime.txt
-click==8.1.7
+click==8.1.8
     # via
     #   black
     #   pip-tools
-contourpy==1.2.0
+contourpy==1.3.1
     # via matplotlib
-coverage[toml]==7.4.0
+coverage[toml]==7.6.10
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
 deprecation==2.1.0
     # via -r deps/runtime.txt
-dill==0.3.7
+dill==0.3.9
     # via pylint
 duet==0.2.9
     # via cirq-core
-exceptiongroup==1.2.0
+exceptiongroup==1.2.2
     # via pytest
-execnet==2.0.2
+execnet==2.1.1
     # via pytest-xdist
-fastjsonschema==2.19.1
+fastjsonschema==2.21.1
     # via nbformat
-fonttools==4.47.2
+fonttools==4.55.8
     # via matplotlib
-h5py==3.10.0
+h5py==3.12.1
     # via
     #   -r deps/runtime.txt
     #   pyscf
-idna==3.7
+idna==3.10
     # via requests
 iniconfig==2.0.0
     # via pytest
-isort==5.13.2
+isort==6.0.0
     # via pylint
-jax==0.4.31
-    # via -r deps/resource_estimates_runtime.txt
-jaxlib==0.4.31
+jax==0.4.38
     # via -r deps/resource_estimates_runtime.txt
-jsonschema==4.21.0
+jaxlib==0.4.38
+    # via
+    #   -r deps/resource_estimates_runtime.txt
+    #   jax
+jsonschema==4.23.0
     # via nbformat
-jsonschema-specifications==2023.12.1
+jsonschema-specifications==2024.10.1
     # via jsonschema
-jupyter-core==5.7.1
+jupyter-core==5.7.2
     # via nbformat
-kiwisolver==1.4.5
+kiwisolver==1.4.8
     # via matplotlib
-lazy-object-proxy==1.10.0
-    # via astroid
-matplotlib==3.8.2
+matplotlib==3.10.0
     # via
     #   ase
     #   cirq-core
 mccabe==0.7.0
     # via pylint
-ml-dtypes==0.3.2
+ml-dtypes==0.5.1
     # via
     #   jax
     #   jaxlib
 mpmath==1.3.0
     # via sympy
-mypy==0.782
+mypy==1.14.1
     # via -r deps/mypy.txt
-mypy-extensions==0.4.4
+mypy-extensions==1.0.0
     # via
     #   black
     #   mypy
-nbformat==5.9.2
+nbformat==5.10.4
     # via -r deps/pytest.txt
-networkx==3.2.1
+networkx==3.4.2
     # via
     #   -r deps/runtime.txt
     #   cirq-core
-numpy==1.26.3
+numpy==1.26.4
     # via
     #   -r deps/runtime.txt
     #   ase
@@ -105,120 +106,133 @@ numpy==1.26.3
     #   jaxlib
     #   matplotlib
     #   ml-dtypes
-    #   opt-einsum
     #   pandas
+    #   pandas-stubs
     #   pyscf
     #   scipy
-opt-einsum==3.3.0
+    #   types-networkx
+opt-einsum==3.4.0
     # via jax
-packaging==23.2
+packaging==24.2
     # via
     #   black
     #   build
     #   deprecation
     #   matplotlib
     #   pytest
-pandas==2.1.4
+pandas==2.2.3
     # via cirq-core
+pandas-stubs==2.2.3.241126
+    # via -r deps/mypy.txt
 pathspec==0.12.1
     # via black
-pillow==10.3.0
+pillow==11.1.0
     # via matplotlib
-pip-tools==7.3.0
+pip-tools==7.4.1
     # via -r deps/pip-tools.txt
-platformdirs==4.1.0
+platformdirs==4.3.6
     # via
     #   black
     #   jupyter-core
     #   pylint
-pluggy==1.3.0
+pluggy==1.5.0
     # via pytest
 pubchempy==1.0.4
     # via -r deps/runtime.txt
-pylint==2.15.10
+pylint==3.3.4
     # via -r deps/pylint.txt
-pyparsing==3.1.1
+pyparsing==3.2.1
     # via matplotlib
-pyproject-hooks==1.0.0
-    # via build
-pyscf==2.4.0
+pyproject-hooks==1.2.0
+    # via
+    #   build
+    #   pip-tools
+pyscf==2.8.0
     # via -r deps/resource_estimates_runtime.txt
-pytest==7.4.4
+pytest==8.3.4
     # via
     #   -r deps/pytest.txt
     #   pytest-asyncio
     #   pytest-cov
     #   pytest-xdist
-pytest-asyncio==0.23.3
+pytest-asyncio==0.25.3
     # via -r deps/pytest.txt
-pytest-cov==4.1.0
+pytest-cov==6.0.0
     # via -r deps/pytest.txt
-pytest-xdist==3.5.0
+pytest-xdist==3.6.1
     # via -r deps/pytest.txt
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   matplotlib
     #   pandas
-pytz==2023.3.post1
+pytz==2025.1
     # via pandas
-referencing==0.32.1
+referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.32.0
+requests==2.32.3
     # via -r deps/runtime.txt
-rpds-py==0.17.1
+rpds-py==0.22.3
     # via
     #   jsonschema
     #   referencing
-scipy==1.11.4
+scipy==1.13.1
     # via
     #   -r deps/runtime.txt
     #   ase
     #   cirq-core
     #   jax
     #   jaxlib
     #   pyscf
-six==1.16.0
+six==1.17.0
     # via python-dateutil
 sortedcontainers==2.4.0
     # via cirq-core
-sympy==1.12
+sympy==1.13.3
     # via
     #   -r deps/runtime.txt
     #   cirq-core
-tomli==2.0.1
+tomli==2.2.1
     # via
     #   black
     #   build
     #   coverage
+    #   mypy
     #   pip-tools
     #   pylint
-    #   pyproject-hooks
     #   pytest
-tomlkit==0.12.3
+tomlkit==0.13.2
     # via pylint
-tqdm==4.66.3
+tqdm==4.67.1
     # via cirq-core
-traitlets==5.14.1
+traitlets==5.14.3
     # via
     #   jupyter-core
     #   nbformat
-typed-ast==1.4.3
-    # via mypy
-typing-extensions==4.9.0
+types-networkx==3.4.2.20241227
+    # via -r deps/mypy.txt
+types-pytz==2024.2.0.20241221
+    # via pandas-stubs
+types-requests==2.32.0.20241016
+    # via -r deps/mypy.txt
+types-setuptools==75.8.0.20250110
+    # via -r deps/mypy.txt
+typing-extensions==4.12.2
     # via
     #   astroid
+    #   black
     #   cirq-core
     #   mypy
-tzdata==2023.4
+    #   referencing
+tzdata==2025.1
     # via pandas
-urllib3==2.2.2
-    # via requests
-wheel==0.42.0
+urllib3==2.3.0
+    # via
+    #   requests
+    #   types-requests
+wheel==0.45.1
     # via pip-tools
-wrapt==1.16.0
-    # via astroid
 
 # The following packages are considered to be unsafe in a requirements file:
 # pip